3300013899: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 294

Overview

Basic Information

• IMG/M Taxon OID: 3300013899
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118643 | Gp0137847 | Ga0117808
• Sample Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 294
• Sequencing Status: Permanent Draft
• Sequencing Center: Chalmers University of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78971833
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F076064	Metagenome	118	N
F078004	Metagenome	117	N
F084124	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117808_105142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2122
Ga0117808_112006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1175
Ga0117808_113996	Not Available	1048

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117808_105142	Ga0117808_1051423	F026592	QGIAALAAQGGVATLTERSDATFSVEQFSSADRE*
Ga0117808_112006	Ga0117808_1120063	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELIRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
Ga0117808_113996	Ga0117808_1139961	F084124	LNTTAKAFARATKGNKHHFHSQRIALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAA
Ga0117808_132480	Ga0117808_1324801	F078004	VSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKAFTAGSVTVAGVLATHHDVSLAAQTVLVIGTIFHNTF*