3300013780: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 2

Overview

Basic Information

• IMG/M Taxon OID: 3300013780
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118605 | Gp0137432 | Ga0120044
• Sample Name: Marine microbial communites from Sargasso Sea - Prochlorococcus B258 80m rep 2
• Sequencing Status: Permanent Draft
• Sequencing Center: UCI
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3656953
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Prochlorococcus And Synechococcus Communites From Sargasso Sea And California Currents

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001614	Metagenome / Metatranscriptome	663	Y
F016646	Metagenome / Metatranscriptome	245	Y
F029759	Metagenome / Metatranscriptome	187	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120044_10234	Not Available	1163
Ga0120044_10400	Not Available	1005
Ga0120044_10827	Not Available	766

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120044_10234	Ga0120044_102342	F029759	MWLTSAMFTYFYVFWALVALNVFVFGVSLYALAHVRSTNKALNDLDWETLANLTGEVGAMKRSLQKTNSRISGMTSSDPAAILSELPKLQNVTQPNGRVGG*
Ga0120044_10400	Ga0120044_104002	F016646	QFVNEGTEIRVSAAVVGANDGVQGANVNYRFTINNTEFADDAIVPALVTGEPFTDGAASYRTNTVFATGQARNRPLLVFRNQTSGTLVIKFFVFISQQV*
Ga0120044_10827	Ga0120044_108271	F001614	MVNFFGTYGGLICGFGGFLTAIAAFLYARARVAEFERATHDLDWQQVSELSLDVAKLKKASQKWQNNMNAQEAVSLKNLKEQALMQSLMQQNGNVQQIRKVEM*