3300013753: Human oral microbial communities from Los Angeles, CA, USA - S20-01-D

Overview

Basic Information

• IMG/M Taxon OID: 3300013753
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134639 | Ga0119809
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S20-01-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 233713808
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F084362	Metagenome	112	N
F095630	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119809_1000336	Not Available	42944
Ga0119809_1000406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	37965
Ga0119809_1016739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2207

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119809_1000336	Ga0119809_100033653	F084362	MNCAFTVRWSDEKNKPHAKTYATEVDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETDAEQKGFWWEK*
Ga0119809_1000406	Ga0119809_100040637	F076191	MKIIAENPAEEALLWRIKSLSDELVDQDNRYTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENDHHYENPTTYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0119809_1016739	Ga0119809_10167392	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCFIDAELYSPVAQRAYGEALRLFDEWDIPGDAALRAAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKAYDKSSVNTLFRVPYIKYSRKSKSLFPEYVLEYSVDEKYIQSSIDQALAAVVIQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSASSFCDNLQAALVRCSHNHEQVLLGRDTLNSILGGCVIGGEGWLKMADNKLIGQILKAIEIDVYDI*