NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300013747

3300013747: Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S1-Shot-B61-calc



Overview

Basic Information
IMG/M Taxon OID3300013747 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118456 | Gp0134801 | Ga0116837
Sample NameOral microbial communities from fossilized dental plaque from Dalheim, Germany - S1-Shot-B61-calc
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Oklahoma
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size64684388
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameOral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossilized Dental Plaque → Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationGermany: Dalheim
CoordinatesLat. (o)51.565093Long. (o)8.849015Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051211Metagenome144N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116837_1008053All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1002Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116837_1008053Ga0116837_10080532F051211MKAKKAIRIFEKIRDLPYGTSGSNEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILSLRRQRYERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKFFRGNPKEFYTAIDKWLADTRTHQSS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.