3300013745: Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S5-Shot-G12-calc

Overview

Basic Information

• IMG/M Taxon OID: 3300013745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118456 | Gp0134834 | Ga0116841
• Sample Name: Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S5-Shot-G12-calc
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Oklahoma
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55608129
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossilized Dental Plaque → Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Germany: Dalheim
• Coordinates
  • Lat. (^o): 51.565093
  • Long. (^o): 8.849015
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054111	Metagenome	140	N
F066860	Metagenome	126	N
F095630	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116841_1009132	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	793
Ga0116841_1009494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	781
Ga0116841_1022012	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	552

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116841_1009132	Ga0116841_10091321	F095630	LQSRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALRLFDEWDIPGGVALRAAGECGIEVNRAVVELQQDELLHNLNTVQSSVWCRQSDMTYCKADDKSSVNTLFRVPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPVDQSLAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCDNLQEALVRCSHNYEQVLLGRDTLNSILGGCVIGGQGGLKVADN
Ga0116841_1009494	Ga0116841_10094941	F066860	MTTKKQKLQKQQTIDTWIIIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI*
Ga0116841_1022012	Ga0116841_10220122	F054111	MNKSLESITHEEFLKLMERLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTADRDLFLNIFLIKRFSFGRRNYNIPT*