NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013742

3300013742: Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S3-Shot-B61-calc



Overview

Basic Information
IMG/M Taxon OID3300013742 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118456 | Gp0134832 | Ga0116839
Sample NameOral microbial communities from fossilized dental plaque from Dalheim, Germany - S3-Shot-B61-calc
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Oklahoma
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47898252
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameOral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossilized Dental Plaque → Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationGermany: Dalheim
CoordinatesLat. (o)51.565093Long. (o)8.849015Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051211Metagenome144N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0116839_1009662All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria813Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0116839_1009662Ga0116839_10096621F051211MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILSLRRQRYERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKFFRGNPKEFYTAIDKWLADTRTHQSS*

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