3300013737: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_DNA_MDA_NLN

Overview

Basic Information

• IMG/M Taxon OID: 3300013737
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118633 | Gp0137663 | Ga0117782
• Sample Name: Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_DNA_MDA_NLN
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Institute of Marine Science
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25608059
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coral Viral Communities From The Great Barrier Reef, Australia
• Type: Host-Associated
• Taxonomy: Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Australia: Great Barrier Reef
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023365	Metagenome	210	Y
F023524	Metagenome / Metatranscriptome	209	Y
F035988	Metagenome	171	Y
F059829	Metagenome / Metatranscriptome	133	Y
F073070	Metagenome / Metatranscriptome	120	Y
F074384	Metagenome / Metatranscriptome	119	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117782_101716	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis	1255
Ga0117782_103396	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Pocilloporidae	951
Ga0117782_103936	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina	913
Ga0117782_113727	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	573
Ga0117782_115661	Not Available	540
Ga0117782_118572	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117782_101716	Ga0117782_1017161	F023524	KLYIGETRRRLGDRFREHLRDVELNDKDASKHVVRHFNLPNHSKQHMAVYGLSLHLGSSESRKTLEQKFIFQIGTLNPHGINERFSFN*
Ga0117782_103396	Ga0117782_1033961	F073070	NRYGHRSGYQLWDNSMVVRNLFLAEEGGKTKVPTHISYEEWDCTALFQATIYARSFATSDSKGHYKTLGELYVKHHKVPLGKFHPTVVSPSGNTAETFALAIDQLRLLRNSLCHSDKSEIDKLTFDQYVQLAKEAFKALGIMTDPIDAVGGLTESDFPTKEVRKLEESFRQETRSYIECLEEVQSSVDKLVAQGNAIAVLEGKRTFSLFPSHSSIAV*
Ga0117782_103936	Ga0117782_1039361	F023524	MWCYILYNHLYVQSYECRRLGDRFRERLRNVTRNDKATSKPVAKHLNLATYCIQHMAVSGLSLHLGSSESRKTPEQKFIFQISTFNLHGIDARFSFD*
Ga0117782_106341	Ga0117782_1063412	F023365	ANIGEITEIINASELTLEVGSDVYIMLKNLQVHVGFVENRTATTGAGALYTLGKGDHFFTFTLVLTTPELSSLNNLVGPDSDGDTTSTAWKIVAKDVSAATKTMAATGFLREYDVSKPEEGKIEIDCFIRITGNTITIT*
Ga0117782_113727	Ga0117782_1137271	F035988	VKQLLETREIPLDKEDCNQTNGECTLITKPVIFIKGIQTRSQLEHYCQVPAATVRNWSKGRYTLRILINPATPKTSQIGVYAKFEGMTEGATGSQWVPLTSKGELEDKMLRCIQDRLQGGNCENIK*
Ga0117782_115661	Ga0117782_1156611	F059829	VDVSPALNSPTGLVPANVNGPISFRVLEHSFMSAVIGNERPKIGLTTNRCLGYIAETFHPSQRVDTVDPEINWPGMKFNTATILVGQYVPGADGVNDPDLGDYSAANETFWWLNPGPQGDDAYLRLYIAASEAFAFGFTGFKGARDDNQVSGQIQFAGNLTGKAPRYSRGLYGITSA*
Ga0117782_118572	Ga0117782_1185721	F074384	KHMAVSGLSLHLGSLESPKTQEQKCFFQIGTLNPHGINERFSFN*