3300013499: Human oral microbial communities from Los Angeles, CA, USA - S17-02-D

Overview

Basic Information

• IMG/M Taxon OID: 3300013499
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134636 | Ga0119806
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S17-02-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94866910
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F066860	Metagenome	126	N
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119806_1027182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	672
Ga0119806_1029989	Not Available	629
Ga0119806_1030342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	625

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119806_1027182	Ga0119806_10271822	F066860	IDMTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKVHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVTI*
Ga0119806_1029989	Ga0119806_10299891	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGKIILEGGTHAGSNDVSYTVTGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGTMAEGVGTSNMKSKVVFDAFTRLLVVRGFKHEGYFGFKDAYIIYS
Ga0119806_1030342	Ga0119806_10303421	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNINHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKE