3300013426: Baboon gut microbial communities from fecal samples in Kenya - M09

Overview

Basic Information

• IMG/M Taxon OID: 3300013426
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134449 | Ga0116649
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - M09
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125838713
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056682	Metagenome	137	Y
F082887	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116649_1001048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8741
Ga0116649_1004635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2669
Ga0116649_1019195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1007

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116649_1001048	Ga0116649_10010487	F082887	MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAIKKEE*
Ga0116649_1004635	Ga0116649_10046352	F056682	VVEKPHKQNTMKTQSRAGKVANQTIAQGKMYAASFRAFPLKNRITFPFQELGKIHKNQEVL*
Ga0116649_1019195	Ga0116649_10191951	F056682	KQNTVKMQSRAGKVANQPIGQGKMYSASFSAFPSKNRITFPIQELRKIHENQEVL*