3300013392: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S2_MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300013392
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127568 | Gp0198145 | Ga0180015
• Sample Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S2_MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145904395
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Finland: the Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2418
  • Long. (^o): 21.4803
  • Alt. (m): N/A
  • Depth (m): 410

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056321	Metagenome / Metatranscriptome	137	N
F061521	Metagenome / Metatranscriptome	131	Y
F065254	Metagenome	128	Y
F093357	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180015_1007332	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2213
Ga0180015_1051903	Not Available	656
Ga0180015_1063741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	580
Ga0180015_1069159	Not Available	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180015_1007332	Ga0180015_10073323	F065254	VALNKGSEQAEKASVATETLLWGCPITNFKATLPFNRMNQSRRGGIAAFKKRPHGPALARFKGYN*
Ga0180015_1051903	Ga0180015_10519031	F061521	MNEAQVRIEIERIVNLVVGFGWTKVEEKTSAGEVLLTLRKAVPVTSVS*
Ga0180015_1063741	Ga0180015_10637412	F093357	MERIIQKKMKNFEQAWQIKRFLAERGESISSLSRKLNRPFGSVANNIYGYRANAQLQREIADFLGKPVAKLFGGAGPVRG*
Ga0180015_1069159	Ga0180015_10691592	F056321	METPAPTPIIYVHVEFYRGVKAIAQFLGVHERTAQAFLHDGKIPGKKDGTGTWVLTNLDYFTSLQR*