3300013391: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300013391
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127568 | Gp0198144 | Ga0180014
• Sample Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89845296
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Finland: the Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2418
  • Long. (^o): 21.4803
  • Alt. (m): N/A
  • Depth (m): 410

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034814	Metagenome	173	Y
F061521	Metagenome / Metatranscriptome	131	Y
F074388	Metagenome	119	N
F076223	Metagenome / Metatranscriptome	118	Y
F096722	Metagenome	104	Y
F098715	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0180014_1000616	All Organisms → cellular organisms → Bacteria	9355
Ga0180014_1003773	Not Available	2310
Ga0180014_1011968	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1040
Ga0180014_1018020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	821
Ga0180014_1018511	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	808
Ga0180014_1021691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	740

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0180014_1000616	Ga0180014_10006166	F096722	MNDEKETYVGPVEQEINSMMGTTGNEIMDITQKGAGTKEDETVQNIHIVNLSRCIIYLAKEIDKLAKPIR*
Ga0180014_1003773	Ga0180014_10037732	F061521	MNEAQIRIEVERIVNLVAGFGWSKVEEKISAGEIRLTLLKVLPEEKATAA*
Ga0180014_1011968	Ga0180014_10119682	F098715	MADSIKVQAMQKLAGVFGAVASIGSVHRWQGSPTDLDRVKLPALFFWDEEETRDKRNRLAMGTLKLYVAVFIRLSPAGAASFNDVADNLQGTIHNALLGTSELQGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY*
Ga0180014_1018020	Ga0180014_10180203	F074388	GETKNLWRWSMKVAEKKKVNKAVGVVVDPTYFSEIPLADIMDAIENHGYLVVDEEHNRWSGFLCGREGQAMFDILSQETGKLDNSNLRLSWYTMASGRYEVLAYVA*
Ga0180014_1018511	Ga0180014_10185111	F076223	MGCRQSGAMLMAGLAVLFMVIMAAAPAPLQAANQVAELMVSDHADAKGVVEQHQSKFSSSVAEIYGTALISGAKKGKEVTTELFYVTQNLNVLSSRDDLPDDGEVTLTFAFPKPDKGWPAGDYKLVISIAGGATKAVTFQVK*
Ga0180014_1021691	Ga0180014_10216911	F034814	MTSLAAEKIETLPGLHSCFTCADNMGCNLEMRCESMAGCLKWRCRVCRAPWWAVGYHHESCNATGVPNGVTYHDGTHMAPLPEASGHYYRHGGYCRVHQSWRCGLGRPDADQ*