3300013383: Baboon gut microbial communities from fecal samples in Kenya - F07

Overview

Basic Information

• IMG/M Taxon OID: 3300013383
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134416 | Ga0116616
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - F07
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119044757
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036964	Metagenome / Metatranscriptome	169	Y
F042737	Metagenome / Metatranscriptome	157	Y
F053097	Metagenome / Metatranscriptome	141	Y
F074899	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116616_1000033	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	121436
Ga0116616_1000051	All Organisms → Viruses	99844
Ga0116616_1002026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4459
Ga0116616_1044622	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116616_1000033	Ga0116616_100003360	F042737	MVLTSKSSEVFEYLKNNGGKVSIEELANATGRSARSVGANVLDLTKKGLVVREKEEVEGAEKPVAYAVLTDAGKNFVPSEDAE*
Ga0116616_1000051	Ga0116616_100005133	F053097	MFDIQGSKIILKTDDLAIPPFRDFYNNAKNKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNNKDYIPDA*
Ga0116616_1002026	Ga0116616_10020262	F074899	MRGWKQWSKQAVTSSFLDKKLPKSLVQQGLEGATAVGKDEVGSSNLPSSSTKSL*
Ga0116616_1044622	Ga0116616_10446222	F036964	MEPLKIIFPLLMVAGALGSLVVNIVSKGDWATSLQWLGACLLYTALTVRNMS*