3300013112: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate a

Overview

Basic Information

• IMG/M Taxon OID: 3300013112
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137076 | Ga0171653
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate a
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 285443138
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
Not Available	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F014465	Metagenome	263	Y
F023792	Metagenome / Metatranscriptome	208	Y
F025767	Metagenome / Metatranscriptome	200	Y
F026538	Metagenome	197	Y
F033867	Metagenome	176	Y
F036767	Metagenome / Metatranscriptome	169	Y
F037424	Metagenome	168	Y
F044922	Metagenome	153	N
F055829	Metagenome / Metatranscriptome	138	Y
F067640	Metagenome	125	Y
F072238	Metagenome	121	N
F096049	Metagenome	105	Y
F096688	Metagenome / Metatranscriptome	104	N
F099327	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0171653_1005631	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	7946
Ga0171653_1013858	Not Available	3681
Ga0171653_1021683	Not Available	2499
Ga0171653_1026174	Not Available	2122
Ga0171653_1027211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2050
Ga0171653_1031823	All Organisms → Viruses → Predicted Viral	1794
Ga0171653_1037539	Not Available	1563
Ga0171653_1039611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1495
Ga0171653_1040459	Not Available	1469
Ga0171653_1046723	Not Available	1305
Ga0171653_1047343	All Organisms → Viruses → Predicted Viral	1293
Ga0171653_1048858	All Organisms → Viruses → Predicted Viral	1261
Ga0171653_1050941	Not Available	1221
Ga0171653_1051299	All Organisms → Viruses → Predicted Viral	1214
Ga0171653_1058499	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1098
Ga0171653_1064413	All Organisms → cellular organisms → Bacteria	1019
Ga0171653_1069328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	961
Ga0171653_1072639	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	926
Ga0171653_1076851	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	882
Ga0171653_1095529	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171653_1005631	Ga0171653_100563110	F072238	MFNIGVKSYDIRDFFDESFVKEYKEVVIEYRNILDKELPTTTNTGNSTKSLELIKWIEERTNKDFSYLYEPVWIYDGQKEYRYDYKFVTAAYEYLDSINIDENWNLVSQLSKDLIPNFSSLSLMYSPPESKTHKYYFMTDKINEVCLKKVIEEFPYMCNSLDDIQWNTNEWIGHMIAMPKGAFMSFHRDNTDDRPFTLLNYLNIDRTREDGGCFRYFIHKDYDVEDKESLDWSKYPDYLYYESVPQEDVENVKSLRYKYHNPPNKTPEYLESIDKFKNYNKYDIVANYTTVNILLHKNHKTKEEDKKYFVLETPPSSDYTGEQGIPHLVTKNKSDEVRYTLYRRVVWKEYLNELSRSVVWKDIREIK*
Ga0171653_1013858	Ga0171653_10138582	F023792	MWISGKHIGNAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVRALQSYDTVRKQVMDVDEKGRGQYDRIAKAIT*
Ga0171653_1021683	Ga0171653_10216832	F044922	MIISISSAIAEDIQYLPRTEEMLNRFLPYEKRRAAAAMGFGLASSSESGADHLARTVAANGGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEVPVASEIARNHANDSQTFSYKDLVCHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLASVFASLAQEEPTVTADLAGVQGKLQNQFYLCDQTAANGDVESYITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSWVAAFDLEKAAHHGATSSGESLATGGILSVNLLKVGSAARHLPVHT*
Ga0171653_1026174	Ga0171653_10261742	F044922	MESILSGGQDFLLPGLSYDLSGDQASYVVSRRQTQINSNVPTAGPNDVRQVTFNIADPSGFLDLSSLCFQWTVTNTDAAASLQPLSAVPHCCWSRMIISISSAIAEDIQYLSRTEEMLNRFLPYEKRRAAAAMGFGLASSSENGADHLARTVAANGGEQRVVWRPLSSGILNSGKLFPGMLLGASGLKITLEVPAASEIARDHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFASLAQEEPAVTADLAGVQGKLQNQFYLCDQTAANGDVESFITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSFVAAFDLEKAAHHGASSTGESLATGGILSVNLLKVGSAAASPSRAYINCLYDAVAELKDSGCFVYS*
Ga0171653_1027211	Ga0171653_10272111	F014465	MVMIGALVRDCSKIMKIVTGYKCDQRGEWIQFAGDHVNAWYQLEN
Ga0171653_1031823	Ga0171653_10318235	F033867	TGRIGLGNMEYMEQYGIHIQTATRVIADYIASEDKMIAEGKMPTVNHLYAFLDRMAETFHDAHKDVMARIGIKDLIKEDFLYLEDKE*
Ga0171653_1034777	Ga0171653_10347774	F096049	MAKVAHAFSPKEWKVGIVSDATNAGASGIGETMNQ
Ga0171653_1037539	Ga0171653_10375392	F044922	VRQVTFNIADPSGFLDLSSLCFQWTVVNSHATAAMQPLSAVSHCCWSRMIISISSAIAEDVQYLSRTEEMLNRFLPYEKRRAAAAMGFGLASSSENGADHLARTVAANGGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEVPAASEIARDHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFTSLAQEEPTVTADLAGVQGKLQNQFYLCDQSAANGDVESYITINNKRMPDFNTIGCQMHLKRLLAACGVYSSIAHGSNINDVAYGCVKGTAAKSWVAAFDLEKAAHHGASSSGESLATGGILSINLQKVGSAAASPSRAYINCLYDCVAELKDSGCFVYS*
Ga0171653_1039611	Ga0171653_10396112	F096688	MRIIKSLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQYNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARSRGIEAAGANRGRRMGC*
Ga0171653_1040459	Ga0171653_10404593	F023792	MWITGKQIGAAWRQTRGFLKSTYHEGKQWANVIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRKQVMDVDERGREHVGRIARAIT*
Ga0171653_1046723	Ga0171653_10467234	F099327	GEEISLLVDGIKIMSLQDLSWKASQKKTPIRGAGFRKAHGMGRGPKEYDLDFEVKELNQAVISEPINSPRSNQMQLKVFKIGDVEFKDLLDIKNATILIVYPTKNNLQKIIRFLGFEFTDVEGGFSLDDEAMTRKMSGVALDAEGLI*
Ga0171653_1047343	Ga0171653_10473431	F026538	MIMYKLNENSIQRLSDNASNPQAEGHRDYQQFLQDVKSE
Ga0171653_1048858	Ga0171653_10488582	F037424	MSWNGTVTCSNCYSTGHNKRKCPRLTAQLKEKWERQSEAAERYRTMTDEECANESSTAREWNIDYHEKMAQQARVEYMKRTKIDLATGEKVTNKAAKAERMKNVTCGYCRDSGHTRRICEVVKRDKLVFIEESRRVRAGSLANARETGIGMGSMIPIRVSGYHGPDQEWGSYTSLRYVKSVDWNAVTAARAGLWVYHVEAGKLASANQSRWTSRDKILRLQENFKEARDHAELTHEPEPTASLIPSLDPPDGWLECEPS
Ga0171653_1050941	Ga0171653_10509411	F044922	MESILSGGQDFLLPGLSYDLSGDQASYVVSRRQSQINSNVPTAGPNDVRQVTFNIADPSGFLDLSSLCFQWTVTNTHATAAMQPLSAVPHNCWSRKILSISSAIAEDIQYLSRTEEMLNRFLPLEKRRAAAAMGFGLASGTENGADHLARAIPAGGEQRVVWRPLSSGILNSGKLFPGMLLGASGLKITLEVPAASEIARNHANDSQTFSYKDLVCHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFASLAQEEPTVTADLVGDQGKLQNQFYLCDQSAANGDVESFITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSFF
Ga0171653_1051299	Ga0171653_10512992	F026538	MYKLNENSIQRLSDNASIPQAEGNRDYQQFLQDVKSEGISIVEGADVIEP
Ga0171653_1057023	Ga0171653_10570234	F096049	MATVAHAFSPKEWKVGIVSDATTAGATGIGSTLNQLDVDSIGFPSLNVTQKLDV
Ga0171653_1058499	Ga0171653_10584992	F067640	MIEVGSLLRMWGNHSKWIALDIIADQVLVVSQKHNHKMWQTKEAFEVIG*
Ga0171653_1064413	Ga0171653_10644131	F005149	MTKTKTKCLLCTAVTYPGHHFYDHLEDVHMMPIRRQRIVAVGVDKYGQERGLVEEETHDECMERFKFNHPEYGTEMCWCPDCIGGETLDMVSKVCETHGE
Ga0171653_1069328	Ga0171653_10693281	F025767	MPNYRMVNPVTGEAEDISCTIADMEVLKQEGWVHVFVPNPNSIISGRDHSGHSGGHGTDEGWKDTLRRIRDNNPGS
Ga0171653_1072639	Ga0171653_10726391	F036767	MRKNSCGKVDILKTDYDKNISKVPELIGKHPGVIAPVTLYKINPLEFVKPASASRVSGTMEVEVRIREGNEELEKNLKKVVLTIDGKRFEFEKPPYRVDFDTSHARYRMITLKAEAIGKNEDQEDAVLASFYTNVIAENGELDKTKPLLLFGGVLEPKIENRREPWTPEMYSKAYTF
Ga0171653_1076851	Ga0171653_10768511	F055829	MRAWDQTQVIFKDIMENLKKSGHDIPWDVHSLIIGKRPAHLKNMIKKHVIENKVTCIVLCDFITDLSDFEDTKGLWEEVQEAIDLVEKETGKRLPLSIVYTTGGDLKGTHPDFAEAALKMTKNEIETSGIPENAKVGFIMGEHGYPPGNGEEDAIGINQERVRQNIRRVYDKAIPGLRKGVTEYQLGMNEFNNHPDSWQPSSMERMIDYLHRGFDAIIFQPYYFTYETIDLFEHLRHWVFEVDGIDYHHEFHGGHEILPNYRSDFDFRGTRIIVTGSLLGRYEKDGNLPLVQE
Ga0171653_1095529	Ga0171653_10955291	F037424	YEERAEHRRQQYMKRTKIDLATGEKVKNKVAKAERMKNVTCGYCQLRGHTRRVCEVVKRDKLVFIEESRRVRAGALENARETGIGVGSMIPIRVSGYHGPDQEWGSYTSLRYVKSVDWNALTAARAGLWVYHVEAGKLASANQSRWTSRDKILRLQENFKEVRDHAELTHEPEPVASLIPSLDPPDGWLDCEPSTIDVAKQFPTTGGKYDKQRKHDYNWPSGETAQVIRDLG