Sample 3300013111

Basic Information
IMG/M Taxon OID	3300013111 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118094 \| Gp0137077 \| Ga0171654
Sample Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate b
Sequencing Status	Permanent Draft
Sequencing Center	Georgia Genomics Facility
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate b

Sequencing Status

Permanent Draft

Sequencing Center

Georgia Genomics Facility

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	277888898
Sequencing Scaffolds	25
Novel Protein Genes	27
Associated Families	21

Dataset Contents

Total Genome Size

277888898

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

Ecosystem Assignment (GOLD)
Name	Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Ecosystem Assignment (GOLD)

Name

Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal water body → coastal sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003285	Metagenome / Metatranscriptome	496	Y
F007770	Metagenome	345	Y
F018267	Metagenome	236	Y
F018941	Metagenome / Metatranscriptome	232	N
F020653	Metagenome	222	Y
F023792	Metagenome / Metatranscriptome	208	Y
F025767	Metagenome / Metatranscriptome	200	Y
F026445	Metagenome / Metatranscriptome	198	Y
F029898	Metagenome	187	N
F037424	Metagenome	168	Y
F037788	Metagenome / Metatranscriptome	167	Y
F039005	Metagenome / Metatranscriptome	164	Y
F039110	Metagenome / Metatranscriptome	164	Y
F044922	Metagenome	153	N
F058921	Metagenome	134	Y
F060972	Metagenome	132	Y
F077964	Metagenome	117	Y
F078661	Metagenome / Metatranscriptome	116	N
F080925	Metagenome / Metatranscriptome	114	N
F088719	Metagenome	109	Y
F104964	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0171654_1007649	Not Available	6175	Open in IMG/M
Ga0171654_1013510	Not Available	3722	Open in IMG/M
Ga0171654_1015281	Not Available	3341	Open in IMG/M
Ga0171654_1019998	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	2621	Open in IMG/M
Ga0171654_1022661	All Organisms → cellular organisms → Bacteria	2343	Open in IMG/M
Ga0171654_1030324	Not Available	1806	Open in IMG/M
Ga0171654_1032749	All Organisms → Viruses → Predicted Viral	1689	Open in IMG/M
Ga0171654_1034243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1628	Open in IMG/M
Ga0171654_1034606	Not Available	1613	Open in IMG/M
Ga0171654_1038048	Not Available	1487	Open in IMG/M
Ga0171654_1043056	Not Available	1344	Open in IMG/M
Ga0171654_1051484	Not Available	1176	Open in IMG/M
Ga0171654_1059720	Not Available	1056	Open in IMG/M
Ga0171654_1060450	Not Available	1046	Open in IMG/M
Ga0171654_1060464	Not Available	1046	Open in IMG/M
Ga0171654_1062746	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1019	Open in IMG/M
Ga0171654_1062794	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	1018	Open in IMG/M
Ga0171654_1069353	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	947	Open in IMG/M
Ga0171654_1071599	Not Available	925	Open in IMG/M
Ga0171654_1077242	Not Available	872	Open in IMG/M
Ga0171654_1082773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	824	Open in IMG/M
Ga0171654_1084451	Not Available	809	Open in IMG/M
Ga0171654_1089168	Not Available	767	Open in IMG/M
Ga0171654_1092394	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
Ga0171654_1095204	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	711	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171654_1007649	Ga0171654_10076491	F104964	ISKGGQDNIMPPYKTVSKAWLVFPEKRLWDGLFDDRKLREEITEMIKDGAKINAIKALKLYAEENFLGCSLREIKNVIDKYNYRYIITTKIERLRERIEEWCSENGYEKMENQKEIKDKSGQYTYKYSDWEYIDDAYGNMINDGDWLPHQKEMKKYNELWRKYE*
Ga0171654_1013510	Ga0171654_10135103	F044922	MESILSGGQDFLLPGLSYDLSGDQASYVVSRRQTQINSNVPTAGPNDVRQVTFNIADPSGFLDLSSLCFQWTVTNTDAAASLQPLSAVPHCCWSRMIISISSAIAEDIQYLSRTEEMLNRFLPYEKRRMAAAMGFGLASSSENGADHLARTVAANGGEQRVVWRPLSSGILNSGKLFPGMLLGASGLKITLEVPAASEIARDHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFASLAQEEPAVTADLAGVQGKLQNQFYLCDQTAANGDVESFITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSFVAAFDLEKAAHHGASSTGESLATGGILSVNLLKVGSAAASPSRAYINCLYDAVAELKDTGCFVYS*
Ga0171654_1015281	Ga0171654_10152811	F044922	MIISISSAIAEDIQYLSRTEEMLNRFLPYEKRRAAAAMGFGLASSSENGADHVARTVAANSGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEVPAASEIGRDHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFTSLAQEEPTVTADLAGVQGKLQNQFYLCDQSAANGDVESFITINNKRMPDFNTIGCQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSFIAAFDLEKAAHHGATSTGESLATGGILSVNLLKVGSAAASP
Ga0171654_1019998	Ga0171654_10199981	F060972	LHTYIVGINYESPDEDKGHFDIRRKVTIRELAEEVSDYLENGKSSYPAFPPEANPEVWYVWDMDEPDDGDVYHELMAEIEKLKSLKT
Ga0171654_1022661	Ga0171654_10226614	F037788	MKEVKGLDFWARSSIWWELIIPGYFFGKTFGTSDAKYRFLDAFMYPKSFIDFCGYFRDLPVGHYTARFLGVFSGALLGVFIALLIGVFYKWVLKDWAYSKAARIGSLAFILIALMTGFMSDMFCESIGMGLRIEENVPNELVGKFLVEDHGSFEKGTKITIQNAPLLDAYGTVRAHNPESARRWWIASLIFMYAWFVLYFLCAHRFFKRNLVPRKAFLKLHMINLAVVIILL
Ga0171654_1030324	Ga0171654_10303243	F023792	MWISGKQIGNAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKAPQSYDTVRKQVMDVDERGREHAGRKQGQ*
Ga0171654_1032749	Ga0171654_10327494	F039110	MSKVAKKAVAKKATKLTLKALADGSHGIDGGIYTFKKGDVVTVSKKGHYDSMKELACFSEG*
Ga0171654_1034243	Ga0171654_10342431	F026445	MDSIDHVKQERQNRTVTLYLGNTLAEYEDMISTASGIQALIQRVEIADSLNWGPLADGHDAHCPRQLHFTHHGSYTRWARHFDGTQSLVTILRVRCLDCRTVFTIQPAFIVRYKRYETDAIEKFMVLLFITEDSYRMAGVSQSLGMDTQRAGTWMALAEAGGDAVSPTAVWALVQWLGQLSPAQLNLALGADPPTHIIEDEKHVKECGQKAYVPLVYAPKEALIWWIDYIDSVSEEALRSSLERFKAISDRLAHITGATVDGWDPAQNALRQVFPGITLAECHLHAMIKLGQHLATFKRQRKVAGQPVSEQEEALIREAFIRVLQAPTPEAYQEALAELPDVFDQDPLASRKSSLTGKQALFQAWTTDHKLAVVTTALDQCMKFLNRKQDNMQTFHTSESGLATVNAWAITRNCWRFLKGAKRAGLSPLELAGADFLGIPWMQLVNLVLCTWTTLSLAAKVLISRT*
Ga0171654_1034606	Ga0171654_10346062	F039005	MHKQTLGATIYSGLQKGLHVGQRAIEYTALAKGIYEAGQTLFSIGRAAAPMVAAIL*
Ga0171654_1038048	Ga0171654_10380482	F023792	MWISGKHIGNAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLQMGEALGSGVKALQSYDSVRKQVMDVDEKGRGHYDRIAKAIT*
Ga0171654_1043056	Ga0171654_10430562	F023792	MWITGRQIGNAWMQTRRFFKNTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRRQVMDVDERGREHVGRIARAIT*
Ga0171654_1051484	Ga0171654_10514841	F020653	MADIQEIPLDIAEEVQDIVEDTAEAKAEEESEPVVLEEVKPVMKPKAKGRPKGSRNLQPSKPRAKKTQIQEAPVEAPVKETYEPSSPKRNLRIPTDPTSSEVAAAMLKLLQDQSYSRQSRKQRLYNSWFQ*
Ga0171654_1059720	Ga0171654_10597201	F044922	MIISISSAIAEDIQYLSRTEEMLNRFLPYEKRRAAAAMGFGLASSSENGADHLSRTVAAASGEQRVVWRPLSSGILNSGKLFPGMLLGASGLKITLEVPAASEIARNHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLATVFTSLAQEEPTVTADLAGVQGKLQNQFYLCDQSAANGDVESYITINNKRMPDFNTIGCQMHLKRLLAACGVYSSIAHGSNFNDVAYGCVKGTAAKSWVAAFD
Ga0171654_1060450	Ga0171654_10604501	F080925	MPEVQDIKHTGPVLKHKQSKTEILPRLSSRICVAGPSGVGKGVLVMQLLTNPEFYRGCFERIYYFSQSAKVDSNLLGLKAYCEKELGQTEECLFSEFDEGFLRDLLNRQLKITQHLKQRAANGGPKKAMGVCVVIDDFIDMPSVVRKANGVLSSIAIRGRHGFVTCFYMTQKYRALGTEIRTNFNALMFFRQRSRFDLEAFLEENSAIIPREQLYQMYVKATSRDHGFLYCDLMQSDPAKMFYSSFSARLVPKGMLSVGNEEDEG
Ga0171654_1060464	Ga0171654_10604642	F025767	RMINPDTGQAEDITCSIADMEVLKQEGWVHVLVSNPNVIISGRDHSGQSGGHGTDQGWKDVLRRIKANNPKSNIDI*
Ga0171654_1062613	Ga0171654_10626131	F088719	REIDDMVSSPIDTSWKSGQFIAQEYIDVKHDIRITILGDKIFFGKRIHHWKTDEKKRFPYGWYYEDTDSKLDGVDLTADEIEKIKHIGIYLKDITDKHLKSKIMSWDIINEENDFKVLEFAMGFETTFIDNLFYYDINEKKILRLKDKKKDNAFYTQEELLKTIGA*
Ga0171654_1062746	Ga0171654_10627462	F007770	MSGEGLSVSFRRTSMTTKSNKQLLREFQGIIYSSPVRKHMKWYGDAYSVDIVEHGDEELQKWQQEGVAIKDTFQFTISVYDSWYKDASLYESHKRDDSFVTLANEFAKDNWLMYFAEGYPAEWIEQEIIDGEKHWNHYNVKPDDKNIDKICKIWHHYGMSMVRAEQFGQSEKMKSSYWEQAK
Ga0171654_1062794	Ga0171654_10627942	F003285	LMPEQESIHQLKSEIQTLKIKDEYRSKELDALMSKLDDTTTKLNALSENIGRLLAGQELNKTIDNDVRDELKILHSRIGDLHDKMNHMIDKTEARIDSDINSLFKKIDSLEKWRWITIGAATLIAWLLTNIIPKFIQN*
Ga0171654_1065599	Ga0171654_10655993	F088719	REIDDMVSSPIDTSWKSGQFIAQEYIDVKHDIRITILGDKIFFTKRIHHWKEDEKKRFPYGWYYGDKNSRLDGKLLSYEEIEKIKHIGIYLKEITDKHLESKIMSWDIINEESDFKVLEFANCFGFDMDNNNFYYDVKEKKILKTENKLKDNAFYTQEELLKMIGA*
Ga0171654_1069353	Ga0171654_10693531	F037424	GHNKRKCEKLTDQIEDQYHGAAAMAEKERAAGNDGDVRWYEERAEHRRQQYMKRTKIDLATGEKVKNKVAKAERMKNVTCGYCQLRGHTRRVCEVVKRDKLVFIEESRRVRAGALENARETGIGVGSMIPIRVSGYHGPDQEWGSYTSLRYVKSVDWNALTAARAGLWVYHVEAGKLASANQSRWTSRDKILRLQENFKEVRDHAELTHEPEPVASLIPSLDPPDGWLDCEPSTIDVAKQFPTTGGKYDKQRKHDYNWPSGETAQVIRDLGLEEHWKGRF*
Ga0171654_1071599	Ga0171654_10715992	F018267	KPKSFGDDDWSSPSIVLDAFVNDDRRGGGFKDTIWVVWCDGGKYMVNPRNDDIMYLTSSSHLRA*
Ga0171654_1077242	Ga0171654_10772422	F078661	SEIGDSSPPVQTAATRSTAEKAKILERKTLSENDLAAFLAD*
Ga0171654_1082773	Ga0171654_10827731	F037424	MSWNGTVTCSNCYSTGHNKRKCPRLTAQLKEKWERQSEAAERYRTMTDEECANESSTAREWNIDYHEKMAQQARVEYMKRTKIDLATGEKVTNKAAKAERMKNVTCGYCRDSGHTRRICEVVKRDKLVFIEESRRVRAGSLANARETGIGMGSMIPIRVSGYHGPDQEWGSYTSLRYVKSVDWNAVTAARAGLWVYHVEAGKLASANQSRWTSRDKI
Ga0171654_1084451	Ga0171654_10844512	F029898	MRKIIEMIKKIMKKNPVRTQELRYQREYDGEVKNYFVNIFEEWADYYVAYTYDRHGANCGVKRFNKGNIQEMKPAKRNFALVTA*
Ga0171654_1089168	Ga0171654_10891681	F077964	MKKLLIITAIIFLLIPAMALAKTAESRTSPPTIQKIAPGVYYYNYNIQEIQKVPEGGGEAETFYQYNYVTIKGKPTKLKVQQAIAEASSSDDTAIVEEVAANRTIALERLANISAMTYAQINTHIENTFGNLSAAQKASLKKLYKAVLALIKQMDLE*
Ga0171654_1092394	Ga0171654_10923941	F018941	MSIPAMIVFHFDAALELMTDGMEHDLFKKDDMEQLLEGCAKQSEYQAHEFMWRSFKRMLRDDLGGNVVGFS
Ga0171654_1095204	Ga0171654_10952041	F058921	SVIDDRRDAYEEVLTEHFKKNGQMEGGEFMNLAIAIEDSIITSYEWDIETDGDYDQSYECTARYSHYYDPEDLGLGMEVLMQILDSRDFKIELRKQLLEAPRKEQNTQYYLQMNATTVEHAGEAKYTAIFSINADEPDIMTGLFVELVEGEMDDEDNLKVVFNRVLAQFVNSRQPSHMQTNESIVKTWKDFLGES*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013111: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 295m, 250-2.7um, replicate b

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences