3300013107: Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a

Overview

Basic Information

• IMG/M Taxon OID: 3300013107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0172360 | Ga0150956
• Sample Name: Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38166613
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005911	Metagenome / Metatranscriptome	386	Y
F021393	Metagenome / Metatranscriptome	219	N
F050360	Metagenome / Metatranscriptome	145	Y
F053558	Metagenome / Metatranscriptome	141	Y
F057456	Metagenome / Metatranscriptome	136	N
F058207	Metagenome / Metatranscriptome	135	Y
F060454	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0150956_1019078	Not Available	653
Ga0150956_1056978	All Organisms → cellular organisms → Bacteria	683
Ga0150956_1057019	Not Available	760
Ga0150956_1064201	Not Available	744
Ga0150956_1077910	All Organisms → Viruses → Predicted Viral	1278
Ga0150956_1106308	Not Available	2015
Ga0150956_1111707	Not Available	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0150956_1019078	Ga0150956_10190781	F021393	TEIAKSDDAVQRVETEKSFQETVKSGFDTLTEVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*
Ga0150956_1056978	Ga0150956_10569781	F053558	AQKKVANAPKVVKAGVAKSGTSSGREEIRNKIGRLRKTGHLREAQDAIRDMINLKSQQKRR*
Ga0150956_1057019	Ga0150956_10570191	F050360	MSNAEFGAYQDMLRQCEESMFGGDVQDDDEQWHDAKRLLPPTSHMIWAACPNVVLCAYQTFLLYLDSDGQWRDNTGCLFSRKVNFWQYADVPECNISC*
Ga0150956_1064201	Ga0150956_10642011	F005911	KRRLLKLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNACQMGQSLKGKIDGADINQARLGSHTEDDIEAPIDDVFHNGKFINLSTMVKKAIIIAADDPTATSRSGADTSYDLENSGVLIKYADAGGAVITATNTGDGTDTLVSDVHLFVNLAGTPDTASNSPYTDGEPFYYILMDEVSASLAASDITVDLTQFPAGILATNDGGPQAEVSVILPQDDE*
Ga0150956_1077910	Ga0150956_10779103	F060454	RWVAFLIEELKLLEERTNKLDSIENEKDLWFARGQLSVLRQLLYLEEATHRAMEELGI*
Ga0150956_1106308	Ga0150956_11063082	F058207	MKHTLFILLASIGLTGCGTVAQIWETGTEVVSNAVDTVVTGTSDLVTAVGTDVVNTGAFIVDTSAGVVEGVSERVDEETDKLDGDNSEGK*
Ga0150956_1111707	Ga0150956_11117071	F057456	IPSVAFPIIQDLSLLHLVILCPAYATVRFVDNQTVRQD*