3300013106: Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b

Overview

Basic Information

• IMG/M Taxon OID: 3300013106
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0172361 | Ga0150957
• Sample Name: Marine water column microbial functions of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate b
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34375628
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005911	Metagenome / Metatranscriptome	386	Y
F026894	Metagenome / Metatranscriptome	196	N
F036277	Metagenome / Metatranscriptome	170	Y
F054846	Metagenome / Metatranscriptome	139	N
F060454	Metagenome / Metatranscriptome	133	Y
F065855	Metagenome / Metatranscriptome	127	N
F067833	Metagenome / Metatranscriptome	125	Y
F076161	Metagenome / Metatranscriptome	118	N
F082613	Metagenome / Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0150957_1022104	Not Available	714
Ga0150957_1022105	Not Available	714
Ga0150957_1023118	Not Available	796
Ga0150957_1029406	Not Available	594
Ga0150957_1031197	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	536
Ga0150957_1035290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	593
Ga0150957_1041980	Not Available	930
Ga0150957_1044113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	678
Ga0150957_1097340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	546
Ga0150957_1099127	Not Available	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0150957_1022104	Ga0150957_10221041	F082613	GPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSFLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0150957_1022105	Ga0150957_10221051	F082613	GPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAPWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTVDTREIGVRLKFNSWSSGNVRLDLSVSAKG*
Ga0150957_1023118	Ga0150957_10231181	F005911	MNLKRRLLKLLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGTAAEDDIEAPIDDVFHNGKFITLKVMVKKAIIIAADDPTATARAGTDTSYDLEKSGVLIKYADAGGAVITATNTGDGTDTIVADVQLFVNLAGTPDTASNSPYTDGEPFYYILMDEVSASLAASDITVDLTQFPAGILATNDGGPQAEVSVILPQDDE*
Ga0150957_1029406	Ga0150957_10294061	F036277	LCSNPFVDKSTQYELHSPNKNKFDLVYLGSASLNN*
Ga0150957_1031197	Ga0150957_10311971	F067833	VKIKDYGIVAMANVFQHLMYVTAQVSSVMQAGVLTVLMVQMK
Ga0150957_1035290	Ga0150957_10352902	F060454	TDGWLSLIEELKLLEERTNKLDSIENEKDLWFARGQLSVLRQLLYLEEATHRAMEELGI*
Ga0150957_1041980	Ga0150957_10419801	F054846	MSNELNLNDLGLGDNSQSAINDKLPRRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDHDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0150957_1044113	Ga0150957_10441132	F026894	SKSNQNVVQKTNRVQSPVAGVSRKKGTSSNRVKLTSDDLTTAKNFGININDEAALKRFAKEVKDYSDQNTGT*
Ga0150957_1097340	Ga0150957_10973401	F076161	LFFKMRRQVHWTRGPSNVPRRIRLTPRNRRAEAHRFKKSINFASRCPKTDFRAFAENPVAKSLLLPQFGGQKVPPQGASIPNRLTAWTVPQIAADPKERNNLLSCPTNPDAPTGEPV*
Ga0150957_1099127	Ga0150957_10991271	F065855	TAQAATGVWDTFVASTDRSTNDPTVDIGIASLNIEGSGVGGKMNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELSGIPGVGLVLDNSVRQGDVYCVDTELEPTCALFQGPQRVGSQHDEETGDDKYFVIDYHLASIIQSETGRQITGAITPLAW*