3300013070: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft BY (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300013070
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191752 | Ga0164271
• Sample Name: Enriched backyard soil microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft BY (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61672761
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004148	Metagenome / Metatranscriptome	450	Y
F057456	Metagenome / Metatranscriptome	136	N
F064972	Metagenome / Metatranscriptome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164271_1015038	Not Available	2463
Ga0164271_1036820	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	696
Ga0164271_1100423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	948

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164271_1015038	Ga0164271_10150381	F057456	IPSVAFPIIQDLSLLHLVILRPAYATVRFVVNQTVRHDLAVEPIK*
Ga0164271_1036820	Ga0164271_10368201	F004148	MGGNNVKGLYWMETIYPMPNGQSVIPPEKLQKEFEKGTLRPPDPNAEKEVDGDMDEKIDKVIQDIWNFYDPKGTGIMPKKVMEKFFKDALDLYALRMGKKSSKEVMPPGVKYGEAMAQSLAKITSNPQQATKKEFEDFLNCYDLEEALGSFLNISEISVSNNVQFVDTSQFKEQAAQPKKVVYRDYSVLQND*
Ga0164271_1100423	Ga0164271_11004232	F064972	MAESKSTQSLVFPVTDKPHAPFVFFESAPATGFTNGVVNITLAANRTWIEDGKAMNEQVVVAYLRGNIQAALSLRQAIDNALMLASSQQTETKGS*