3300013053: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig MG (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300013053
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191768 | Ga0164285
• Sample Name: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig MG (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41288957
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → anthropogenic environment → compost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003009	Metagenome / Metatranscriptome	513	Y
F004148	Metagenome / Metatranscriptome	450	Y
F005470	Metagenome / Metatranscriptome	399	Y
F040484	Metagenome / Metatranscriptome	161	Y
F071833	Metagenome / Metatranscriptome	121	Y
F076786	Metagenome / Metatranscriptome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164285_117041	Not Available	746
Ga0164285_117293	Not Available	649
Ga0164285_122659	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	4529
Ga0164285_131513	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	600
Ga0164285_136768	Not Available	926
Ga0164285_152579	Not Available	792
Ga0164285_154964	Not Available	726

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164285_117041	Ga0164285_1170411	F071833	VECYNLERGSLESKPQYFERVNKCLDAWQRHFESVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRREENERFANELKETFSQL*
Ga0164285_117293	Ga0164285_1172931	F005470	MSVKLRKEGQVITEFPSEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVKEFLEKFDKGLNKMPKKPLLIFVTYNDWLDNNFDEKTREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEEVKFIEKEFINKNDFEGVAAEDDEELNKE*
Ga0164285_122659	Ga0164285_1226593	F003009	LAWYQRTYFNVNIGNLVKYFSILTVAFHDVHSLFGFFILLVVFSQLISGTMLSFSLVPESMMVPIVRDEEDLEDLYTDDFFWVHERGVDLLFIFS*
Ga0164285_131513	Ga0164285_1315131	F004148	SFGNMGGNNVKGLYYMEIIFPMEDGRTVIPQEQLEKEFQKGTIVRPDPNRAKELDGDMDEYVDKVIQDIWRHYDPKGTGMMPTKVIKKFFKDSLDLCVLRKGLKKNQVVAPGVKMGEAMTQSIAKMTSNPQGATQKEFEDFVNCYDLEEALGAFLNIQEIGISHNVQLVDTNQFKEQAAAPKKVQYRDYSALEN*
Ga0164285_136768	Ga0164285_1367681	F040484	MALAFKRAVVEAEKAVASANASIKDWYKPPVDPALIVDFDGIKAVEGVSTQNPNSVEGPKNITLCNWIKDYASRFHSVWGDIQYKDKERALPIAIKHIDHVVVHMDDKGVAGKYNSYSVEWKGKDIHITVHIDFTNYPQQLSLTDEKNGHVDQMIWAHLDEVCNMTYELRKATSIGYSSSQFNTYQKYLNDKLKKQVPIEVDWDSLAKLEGSSEEYSNKPPVPNRARAVTFLEDGRGFYNVYYAIEKLVGDALGLEAFLETFDKVNVSVSGDSTETRSGPHSVTKDGKTLKFQYKLNLTNLQN
Ga0164285_152579	Ga0164285_1525791	F071833	KNYNINNSFQLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEGNPEYATRVNKCLDAWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINEKDIEACRKEENHRFANELKETFSQL*
Ga0164285_154964	Ga0164285_1549641	F005470	MTSINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE*
Ga0164285_155744	Ga0164285_1557441	F076786	LVAVAFAANPSQPTWPAAFSASILANDNMGDMRFFRWFYSQTLNKDRWDGPAVWGNEVYFSTMIFDHVANIQYDVFFQQELATCFTHTINTTIPRPNLAGFQYVGKAIVGQSPVFHWAETVIGQQNATCQYYDDQVSRDPTRLDFSYGTFAGTWNFMEFDDEPQDSSLFTLPSALLAQCNPVQAQ*