3300013048: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig MG (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300013048
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191762 | Ga0164279
• Sample Name: Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 5th pass 37_C BE-Lig MG (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33206756
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → anthropogenic environment → compost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003009	Metagenome / Metatranscriptome	513	Y
F021039	Metagenome / Metatranscriptome	220	Y
F024692	Metagenome / Metatranscriptome	204	Y
F035602	Metagenome / Metatranscriptome	171	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0164279_127535	Not Available	653
Ga0164279_135158	Not Available	506
Ga0164279_138325	Not Available	1526
Ga0164279_142889	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1248

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0164279_127535	Ga0164279_1275351	F021039	KIGALKFITTNKKREVLAYGSTNANAEEGKPQEPLPPGETKTFDFLKSEGDSFPGYVVGFFGQYDENHVTYLGVYVAPLQEINYYARRAYILTYKKLQQDANLISDVAKKLGIEKEGDRFKDANLDDVDKNSSKIFLYFLDASLNHPELFKAVLEYL*
Ga0164279_135158	Ga0164279_1351581	F024692	DDEAPGTSAAQKSGGGAVSEAKDAATNDFRETLRTVILLILNRLATALEYEQEGFSELATKLEMKNYMQLCAPQHFEAVIKETWDLDKTPPEKPDVPADHISFAQNKFIKLLEAAEKADWRDPSISPQELTDRIQEAVKATQKILRDSAIASNSSDLKIHLFFFAKCL
Ga0164279_138325	Ga0164279_1383251	F035602	LKAIEFCDNGIACFVKGLQYEHDKDYHEALNCYENGAMQLDSLCLFRLHEIYSGDTNFGVEYNERQAMCHLAYSALLSQFETFDHKVTFWAKLEACWKKDAAHKDYLMELLNNPPADYLQSTGPLFAKLFTFYNNKETFIDLLPELKALSIDVTKNKFFAILNAIFDFMAYTYNSGFSKTDLEKYVETILDMLTNDILFENFFQNYVAHLRIIRAKKKFAFLFQRRLETDCFWVWSFSFLASMKNHYLGLLLSFEETFLEGGLILKWKNTESWVNNFIAFCYEKGIGTRKNLAKAAQLYKKDIDQMPRVLYSRYRKVLVVKEKRAHGLQLSQEEENINVDEQAEDLKLKIEERLEDTTRMDCYLFYVYGKIYEKIDEDNDRAIEWYQKGVDVDTDSCLKNHLLCNEAWRLKCKKRLLKLQARKGLQVSIVNKNRED*
Ga0164279_142889	Ga0164279_1428891	F003009	MPITIFNLVRYFAVLSVSFHDVNSLFGFFILLTVFSQLVSGTMLSFSLIPEPMLVPIVRDEEDLEDLYTDDFF*