3300012974: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F16 Day 16 Metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300012974
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0141799 | Ga0123350
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung F16 Day 16 Metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 889132608
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	1
Not Available	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Point Reyes National Seashore, California, USA
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045048	Metagenome / Metatranscriptome	153	Y
F053537	Metagenome / Metatranscriptome	141	Y
F056212	Metagenome	137	N
F057003	Metagenome / Metatranscriptome	137	Y
F058575	Metagenome / Metatranscriptome	134	Y
F059667	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123350_10001873	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	16012
Ga0123350_10035419	Not Available	2974
Ga0123350_10038800	All Organisms → Viruses → Predicted Viral	2797
Ga0123350_10057360	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	2134
Ga0123350_10088791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1571
Ga0123350_10191879	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	920
Ga0123350_10265957	Not Available	739
Ga0123350_10330978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	639

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123350_10001873	Ga0123350_1000187316	F045048	VFINGNSKGSIASIPIGGHIAPNSTVGDRALWKKVQKIAKKNKASDTINKPIPIFNPLWTAKVWLPIYVDII*
Ga0123350_10035419	Ga0123350_100354193	F059667	MKGKTKCSEKNLFKVALLTEKPPQINSTISCPTHGIALIRLVITVAPHNDICP*
Ga0123350_10038800	Ga0123350_100388004	F057003	MANFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGITFMDGVKGKMKIYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWQGDTARTATTKVYLKATDGVEKKLSALPSGNKVALSALTVDNVIAQLEAVITKGMDVANAAEVDTEGYKVFMNHADVRVLEVALGKVCCPNSVNQVFANYARENGRIYVMGYEIVPTMQSRNTIIFGPVRNLVLGYDTFDSHIEYKLINMRDTTGDNMFRVLAISNIAVGIIMPELFVYANV*
Ga0123350_10057360	Ga0123350_100573602	F045048	LIAVIPKGGQDAPNSTVGDKALWKNAQKIARKNNASDTINKATPIFIPRCTDIV*
Ga0123350_10088791	Ga0123350_100887911	F056212	MTFKKFAEIAATHRPDAVVHAHKSFGGVPDIAIYFKQSDGRKSRVYSYRGSYADILNRLGIKVITQTDVATAEAQLRMAKKAHGKPSLFGKGAIRDCSEEIEHLTELLRRSQTDEFVRDWE*
Ga0123350_10191879	Ga0123350_101918791	F057003	MDGVKGKMKMYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWKGDTGYTGTSKVYLKAVDGIEKKLGAIPSDNQLTISAITVGNVVAQVESAIDKALEVAGNAEVDTEGYKIFMNHQDVRVLEVALGKLCCDVQTNRVFSNYARENGRIFIMGFEVVPTMQSKNTIIVGPARNLVLGYDTFDSHIEYKLIDMRDTTGDNMFRVLAISNIAVGIILPELFVFGKTA*
Ga0123350_10265957	Ga0123350_102659572	F058575	MSEKSARELLEQAEELRRNCRFGEAINFYRAAADAPDATEEIKRKSLASVELMQEINGFVNTDLMNP*
Ga0123350_10330978	Ga0123350_103309781	F053537	MHKAIWQADGNLVIRGNSRALLFRALDDARAELGKHGDAADPQVVHTLQALQDVLGAYDGPLPSATELLGDPARERLARNLLKG*