3300012879: Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24_Xylan MG

Overview

Basic Information

• IMG/M Taxon OID: 3300012879
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121620 | Gp0191462 | Ga0160504
• Sample Name: Enriched soil microbial communities from UW Madison campus, WI, USA - DID2937_E24_Xylan MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226810859
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Madison, Wisconsin
• Coordinates
  • Lat. (^o): 43.073
  • Long. (^o): -89.4011
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005470	Metagenome / Metatranscriptome	399	Y
F018299	Metagenome / Metatranscriptome	235	Y
F096377	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0160504_1003187	All Organisms → cellular organisms → Eukaryota	4876
Ga0160504_1008222	Not Available	2881
Ga0160504_1009543	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	2660

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0160504_1003187	Ga0160504_10031874	F018299	MVGDDLNVGTILSEQAFFLKSGVFSLVKLGETPLAGDDDLLSTGELEFTSSESFNSMGNVLFVKSDGVEDLVNLNSGDFTNGLTEGTSHTSLESIGTSAGKHLVNSEDVPRVNSASKMETFLTALLDQVLVGSNTSSFHGFGGDLFLFERNEVNTEGEFFDFSLLFTGIINSDSGIGDTSVITRLGERLATPVSVASSGSSSHFMTLFSLISIKLY*
Ga0160504_1008222	Ga0160504_10082221	F005470	MSVKLRKEGQVITEFPSDMVPRSRLLTKLVEEFISTEVDLEPAPGKDFSPSTINKVKEFLDKFNKGLNKMPKKPLLIFVTYNDWLDNNFDESTREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGVVTQYQDFFTPEEEAKFIEKEFINKNDFEGVAAEDDEELNKE*
Ga0160504_1009543	Ga0160504_10095431	F096377	RWKSFNVTHHKVAGKDRKYIKINNNGDLVQFQSKYKSTPLYFIPTDDNNVNVFITDNGNKTFLIEDFLIQIVDAIISDILGQEDIIEDVVSKLFAKLERNPTPFQEDLWLPIFSIKEKAIDLEAAKSLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPSEKSKILEKPFLFGKFSFIKIFFSNIS*