3300012669: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ487 (21.06)

Overview

Basic Information

• IMG/M Taxon OID: 3300012669
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053075 | Gp0154623 | Ga0136626
• Sample Name: Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ487 (21.06)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18604340
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Streptoalloteichus → Streptoalloteichus hindustanus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Polar Desert Microbial Communities From Antarctic Dry Valleys
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar desert biome → desert → desert sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Antarctica: Dry Valley
• Coordinates
  • Lat. (^o): -78.0845
  • Long. (^o): 163.7452
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008799	Metagenome	328	Y
F028302	Metagenome / Metatranscriptome	192	Y
F032491	Metagenome	179	Y
F044388	Metagenome	154	Y
F044947	Metagenome	153	Y
F046752	Metagenome	150	Y
F059520	Metagenome	133	Y
F062143	Metagenome	131	Y
F089628	Metagenome	108	Y
F094583	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136626_100917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1555
Ga0136626_102780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Streptoalloteichus → Streptoalloteichus hindustanus	920
Ga0136626_103353	All Organisms → cellular organisms → Bacteria → Terrabacteria group	836
Ga0136626_103524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	818
Ga0136626_104289	Not Available	741
Ga0136626_105268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672
Ga0136626_105546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	656
Ga0136626_105725	All Organisms → cellular organisms → Bacteria → Terrabacteria group	645
Ga0136626_106155	Not Available	624
Ga0136626_106537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609
Ga0136626_106576	Not Available	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136626_100917	Ga0136626_1009172	F046752	GRTHSAVVLATIHVRAGEPRGLQLAHGAITSAGKLTSVRVRQRLEPLSAALETRRGSDAEQLARMARQVATTRA*
Ga0136626_102780	Ga0136626_1027801	F089628	MNRPRPLLPPGTQVRTAAADREQHGVVLPYDQQYSWGTFPVLCADGITRRRSAAECVVLERDGPAPGNSTATDTAR
Ga0136626_103353	Ga0136626_1033531	F059520	VASLRRWEGGSQVSRTQSAIVLATIYVRAGEPRGLQLAHSAVIAAGKLTSVRVRRRLEPLAATLETRRGADAEQLARMARQVATTRA*
Ga0136626_103524	Ga0136626_1035241	F008799	VTGPGYPATPLLRRLTAAHGWQHDLACDARGEPVAVVAVRVGPVWTDSVAIAGENETLAMRHRTNDDRLILPTELPSESRAVWRRHGRCEDVLAELFELPSGPGQGPRR*
Ga0136626_104289	Ga0136626_1042893	F032491	TSPRRPPRRMMAGMTTEQHEPGDRFAAARRFPSTLPAPGTGGGAELGQPVRLYGEPVGPWPRPADVPAVAPPVVASGPGNRGPGWLLRGRRGEGAG*
Ga0136626_105268	Ga0136626_1052681	F008799	VSGLGYPATPLLARLTAANGWHHDLVGDDRGEPYALVAVRIGPVWTDSVAIVGEDQTLAMRHRTNDDRLILPAELPSESRAVWRRHGRCEDVLAELFELP*
Ga0136626_105546	Ga0136626_1055461	F044388	LQPGFNGAGAGGIKRVRVHGHYDEDADIAWLRFEGYDSDRVVAEEVDFGLRELDPDERRVVGLEYWQASEILPAELLEMLPAPPLGVAG*
Ga0136626_105725	Ga0136626_1057251	F094583	SFAGKYGAFQRFNGTLGRWVTVKRVLVRANSTGVAPTVISSVTFRSTIRPLLKVRVVLPQLQVGSCYRPGLSNVIRS*
Ga0136626_106155	Ga0136626_1061551	F028302	VEDVHVYVDRPTGKEDTALEDLGEALRRLDHVSGVDLNPSGNVVAVSYEGGKAERDAIKRAVEEAGYAVSRLSVRSSFEERQGRGLWDI*
Ga0136626_106537	Ga0136626_1065372	F062143	PRGWPSVVVAVADRHVAQTFMTVDERLDDMIERHPRHRASIEAARRPAHALEAELAEATGLPVEALVNRLRTAWEAGV*
Ga0136626_106576	Ga0136626_1065761	F044947	MRRVALLLTVMAAALVLASGVAMAVNKVGTNGHDVLRGTDGKDNLLGLGGQDD