3300012662: Baboon gut microbial communities from fecal samples in Kenya - F10

Overview

Basic Information

• IMG/M Taxon OID: 3300012662
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134419 | Ga0116619
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - F10
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145604265
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F036964	Metagenome / Metatranscriptome	169	Y
F048702	Metagenome / Metatranscriptome	147	Y
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F081354	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116619_1001179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8139
Ga0116619_1021034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1160
Ga0116619_1027968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	959
Ga0116619_1033816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	842
Ga0116619_1035703	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp.	811

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116619_1001179	Ga0116619_10011791	F081354	VKHFSSIFPKSSCRSPLKKGAVTEIPLEYGKTEVQSLFEPLSTAISSMELPKNFENKKLPNTLA*
Ga0116619_1021034	Ga0116619_10210343	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGQFLYGGILMGIALPIPSHRAKSHDFVCWWPAAAGHSRSADALPGKSNY*
Ga0116619_1027968	Ga0116619_10279682	F032286	MVKWACQIVTPVRRRALIFDVRLFAGNATDDTLVTGSAFRFCRLMCLCVKRRNIILNSKCRSLFDSALFRADNRTKQKTISPFSLALIFMFDFATLSERRSCPEDRSRRFVPVGTLTLSRSWRLLHWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENELKNADFHAYGQDRKRAEI*
Ga0116619_1033816	Ga0116619_10338162	F056682	MKMQSRAGKVANQPIGQGKMYSASFSAFPSKNRITFPIQELRKIHENQEVL*
Ga0116619_1035703	Ga0116619_10357032	F036964	MELLRIIFPIMMVIGALGSLVVNIIQKGDWPTSLQWLGAMLLYTALTFRNVRG*
Ga0116619_1049343	Ga0116619_10493432	F048702	MKKFNKSVNKKSPEELREYLAFQRRASRVEPKKGKGSYDRKAFKKSGRDSGD*