NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012644

3300012644: Human skin bacterial and viral communities - University of Pennsylvania - MG100781



Overview

Basic Information
IMG/M Taxon OID3300012644 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118646 | Gp0138421 | Ga0118532
Sample NameHuman skin bacterial and viral communities - University of Pennsylvania - MG100781
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Pennsylvania
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25134395
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Skin Bacterial And Viral Communities - University Of Pennsylvania
TypeHost-Associated
TaxonomyHost-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020492Metagenome223Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0118532_108541All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum684Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0118532_108541Ga0118532_1085411F020492MGMQAALLTPAALTAKVNALKQSLERSESELGHAKKQLEEKEGK*

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