3300012630: Freshwater microbial communities from North Martin Creek, Ontario, Canada - S23

Overview

Basic Information

• IMG/M Taxon OID: 3300012630
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121696 | Gp0175708 | Ga0157209
• Sample Name: Freshwater microbial communities from North Martin Creek, Ontario, Canada - S23
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21412001
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Kawartha Lakes
• Coordinates
  • Lat. (^o): 44.58538
  • Long. (^o): -78.5941
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F000324	Metagenome / Metatranscriptome	1299	Y
F019820	Metagenome / Metatranscriptome	227	Y
F029893	Metagenome / Metatranscriptome	187	Y
F034114	Metagenome / Metatranscriptome	175	Y
F042654	Metagenome	158	Y
F079806	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0157209_100707	Not Available	2935
Ga0157209_101063	Not Available	2388
Ga0157209_101085	Not Available	2361
Ga0157209_102702	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1343
Ga0157209_103361	All Organisms → Viruses → Predicted Viral	1108
Ga0157209_103838	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	996
Ga0157209_106070	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	667
Ga0157209_107442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	539

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157209_100707	Ga0157209_1007074	F034114	MPAIFIEASIAAGAVNNNIYSGSAFEFSRGRNIVSLGIVQSATGMFGTLQSGSDIIVEEFSLPIKTSYPIIPDEMYFTDVMENGDRLVGRVRNPTGGALTVRSVVQMSQV*
Ga0157209_101063	Ga0157209_1010632	F029893	MQDSVSVAANSVSANVLSGQLYEFVDPGTQVTVSVTGSATGLRTTFICGVPLINDQAINLQNRFPLVPDDIIHSGQVPGGRMVLTARNTTAGALTYFWRVDL*
Ga0157209_101085	Ga0157209_1010852	F029893	VPTMQDSVSVAANSVSTNVLAGQLYEFVDPGTQVTVSVTGSATGLRTTFICGIPLINDQAINLQNRFPLVPDDIIHSGPVPGGRMVLTARNTTAGALTYFWRVDV*
Ga0157209_102702	Ga0157209_1027023	F000324	MISCPVKFTVTYDGATLNVYHANKGQGVPRHEHAYAHLTMCHAGSILVTKEGKSLTMTKDTQPVNLVANEWHQIEALEDGTVFVNVFAEGKY*
Ga0157209_103361	Ga0157209_1033613	F042654	MLNNNDFISLERRLWREGNPLTDELCSTRDELIYLLSEAKKVMEKYSPVLSTLASSDDLDFYREWDEFGDTLDNISYDLGVDSETQYKLHEVTR*
Ga0157209_103838	Ga0157209_1038384	F000273	MAEEKESAKHALIEKVAFAILPILFTCVVYLMNSLSHLSHEVTVLNNKISLVVTSDNKQATNTGAELAREKLRQDLEKEIQKNRDDIMHNRQDIAVIYEKMKGK*
Ga0157209_106070	Ga0157209_1060702	F079806	MKATIEYDLSQPSEAYAYKCAHKALEACQMLESLKSLTQGYTAYKGLSESVLADIIQDLSQWDNVTV*
Ga0157209_107442	Ga0157209_1074422	F019820	LKPVKISGALYWTKWMAEFNKAFNTDNDKYECTIGNISDDDAAKLTGLGIKVKHKDAMGNFIVAKSKYLFKPTDDNLKEVAIEALGNGSKCVAIVGSYTHRMSAKHGNAPSIKTVMVTEVKTYVPEAATDDEAL*