3300012622: Human skin bacterial and viral communities - University of Pennsylvania - MG100370

Overview

Basic Information

• IMG/M Taxon OID: 3300012622
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118646 | Gp0138034 | Ga0118097
• Sample Name: Human skin bacterial and viral communities - University of Pennsylvania - MG100370
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Pennsylvania
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22700208
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Proteus → Proteus mirabilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Skin Bacterial And Viral Communities - University Of Pennsylvania
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105149	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118097_108147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Proteus → Proteus mirabilis	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118097_108147	Ga0118097_1081471	F105149	YQGGSSRKQGPRLAMRDAEDEPPRDAPVRACEWPSKDFMDQAGIKEEFNAYVRNADLVSFEADKCRQYHYLTSSFVRRFEFSSSHNSQTVLFDLYENSYTMDLEDFTTACKLPSGVILMILPNLNLEISLRILLWKNLGT*