3300012344: Baboon gut microbial communities from fecal samples in Kenya - M10

Overview

Basic Information

• IMG/M Taxon OID: 3300012344
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118445 | Gp0134450 | Ga0116650
• Sample Name: Baboon gut microbial communities from fecal samples in Kenya - M10
• Sequencing Status: Permanent Draft
• Sequencing Center: Duke University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108673165
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Baboon Gut Microbial Communities From Fecal Samples In Kenya
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut → Baboon Gut Microbial Communities From Fecal Samples In Kenya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): 2.717
  • Long. (^o): 37.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042737	Metagenome / Metatranscriptome	157	Y
F063247	Metagenome / Metatranscriptome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116650_1002723	Not Available	3614
Ga0116650_1027108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	736

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116650_1002723	Ga0116650_10027238	F063247	MKKYPRTSTIEIDCDPCTGMGRQQNHYEAICKLLNVKPEPRISAFFGCWEWPITYKTAEDEAKAKEFLTDLYNSGLCRYASW*
Ga0116650_1027108	Ga0116650_10271081	F032286	MVKWVCQTVTPVRHRALIFDARLFAGNAADDTLVTGSTFRFCRLVCLFVKRRNIILNSKRRSLLNSSLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLLRSWRLLRWGTYPVRTVMQFS
Ga0116650_1038475	Ga0116650_10384751	F042737	NAIGRASRSVGANVTDLQKKGLVEREKVEVEGADKPVVYVNLTDAGATFVPGEDAE*