3300012337: Human skin bacterial and viral communities - University of Pennsylvania - MG100586

Overview

Basic Information

• IMG/M Taxon OID: 3300012337
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118646 | Gp0138236 | Ga0118302
• Sample Name: Human skin bacterial and viral communities - University of Pennsylvania - MG100586
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Pennsylvania
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22597517
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Skin Bacterial And Viral Communities - University Of Pennsylvania
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F020492	Metagenome	223	Y
F020828	Metagenome / Metatranscriptome	221	Y
F027342	Metagenome	195	Y
F037171	Metagenome / Metatranscriptome	168	N
F038003	Metagenome / Metatranscriptome	167	Y
F076912	Metagenome	117	Y
F094706	Metagenome	105	Y
F103019	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118302_102207	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1429
Ga0118302_104128	Not Available	957
Ga0118302_104173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	952
Ga0118302_105718	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	781
Ga0118302_106357	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	734
Ga0118302_109335	Not Available	581
Ga0118302_109614	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	571
Ga0118302_109849	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	563

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118302_102207	Ga0118302_1022071	F006329	LLKEKIKKIEEEKMILELHVADVVDDHKIKMDAMRLKIRKIRKYAIHTEAWYHYAVGSIVTLVAIMIAFVFALKCFT*
Ga0118302_104128	Ga0118302_1041282	F076912	LGKSALLSNGKGSNADKVQDSDTSLLVSNKADKTAKEDYLEDSETTPKSCLGLVFELLATTACTSYSNSLSKSVRFLESQLQAERHRSAVLRQEAEGLRKSLEHSDAYFLVQQQALEDFSAKQDKANKLAKLIASMVDTQDNVS*
Ga0118302_104173	Ga0118302_1041731	F037171	MYVCARIENDPVEEPEEFAGEAPEQQSFGGGKCPLTYLCPIHSLIHLPLYTFMPKD*
Ga0118302_105718	Ga0118302_1057181	F094706	MGPAHGGFEFLKGSFEGLKGYAVGRMTKSRRGKLYIDDAGWGPEADSIEYGYRVPFGGMHVFIGKIGEPGPEPDICTDLVETAQRARSTQAKPAVKRAFVGVIHGGGREDESEHGSEAVVYSGDESSTGET
Ga0118302_106357	Ga0118302_1063571	F038003	PSAPTGGASGVDLAFETKASVVPPRHTNPEQVDDASALAEGLQDVALVPETTVQPVPDVTTSLLVDQKVLTNSHLTSFRLGLNPPSDLALAGALVEASATPLGFRMRSPWDRLTDVSTYGPSGSEEDDDPIICWDFSGLGNPSAMRDFMTACDYCLSDCSDGSRSLGDESCGPSRECFHIELGDPSEGNHLGMPEDGDLPRPVPRADIPRELAVVPVPAGGHDPQLEQVRGAQARLDEGVGALE
Ga0118302_109335	Ga0118302_1093352	F020492	MGLQAALLTSAALTEEVDALKQSLERSENELGRAKKQLEDKEGE*
Ga0118302_109614	Ga0118302_1096142	F020828	MKGLIVQMWPGEPLPGSYFGLVKCLVNACPRFEVIKRSVCIEGAHRAFSRAKVHWAKMDAEKLVKEGPPEGKEHRHPEMYYEGVLPGARLIADECSKDVIFE*
Ga0118302_109849	Ga0118302_1098491	F027342	SLERDSKTRESELASTLESAKAAKAEAHKALQEIEALKKIAAGKAFFMQSKHVNVNYLLLTRIRSSPGAFADLPRSVSDAAAFYRAEEGSSTEKVFWSQYAEAGHPVPLSDQLKQLVELHKAAEQAMKGLIVRLWPKEAMPGSYFGLVRRLVDACPWVEVIKRSACIEGARRALACAKVHWGKMDAE
Ga0118302_111664	Ga0118302_1116641	F103019	MLFFHHAGKTSSIPPPAGGLSAAIVIVARRGKEYHVVAAVEGHELKTPETEHRPRLERLLETAHLELDGKLFVNTQQAPTWRANCRRFEIGGSLGRRVKCRRVPQPRWVGAR