3300012249: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012249
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154760 | Ga0136701
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 3A3 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21911457
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136701_100685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2100
Ga0136701_105271	Not Available	709
Ga0136701_107628	Not Available	570
Ga0136701_108674	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136701_100685	Ga0136701_1006851	F090615	KGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHGNLVTAIKIANGERLRAAKAKPAAGS*
Ga0136701_105271	Ga0136701_1052712	F090615	ALRVRKGWLRPDSSIVDKAATEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS*
Ga0136701_107628	Ga0136701_1076281	F090615	SIVAKAAVEGLTKMGVLLCPPLDPDGKSIPARLFNEIAADYLKAVPQARLLIEESIVEHQAFWDTDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS*
Ga0136701_108674	Ga0136701_1086741	F090615	RKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAARAKASAGS*