3300012165: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ026 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012165
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175751 | Ga0153942
• Sample Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ026 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 253039275
• Sequencing Scaffolds: 49
• Novel Protein Genes: 67
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Boletales → Coniophorineae → Serpulaceae → Serpula → Serpula lacrymans	1
Not Available	28
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: New Jersey, Brendan T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.8721
  • Long. (^o): -74.5207
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000950	Metagenome	822	Y
F001529	Metagenome / Metatranscriptome	677	Y
F005805	Metagenome	389	Y
F008285	Metagenome	335	Y
F008928	Metagenome	325	Y
F008983	Metagenome	324	Y
F010439	Metagenome	303	Y
F012417	Metagenome	280	Y
F013487	Metagenome	270	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153942_1004855	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	4414
Ga0153942_1017810	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Boletales → Coniophorineae → Serpulaceae → Serpula → Serpula lacrymans	1680
Ga0153942_1024857	Not Available	1324
Ga0153942_1024928	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1321
Ga0153942_1026974	Not Available	1253
Ga0153942_1034005	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	1081
Ga0153942_1036244	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	1039
Ga0153942_1039357	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	987
Ga0153942_1044922	Not Available	912
Ga0153942_1045757	Not Available	902

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153942_1001847	Ga0153942_10018473	F065291	VSRLILNLLKANCPSDESIDSSTVESLMFHHSESDMGTEAEISRDDRRATFLSLSEGIHEIHEEAR*
Ga0153942_1004855	Ga0153942_10048551	F023015	EDLSNSTKNVSKKSVFTELSADQSVITKSPDTKSPISQELLNVIVYFNNHHEALFNVLLSAINRSKDNKIP*
Ga0153942_1011477	Ga0153942_10114777	F031724	RPVLAAPDLDKEFRVEVDTLNYTTGEVLSMKYSDKL*
Ga0153942_1017810	Ga0153942_10178104	F031724	PVLAAPDLDKEFRVEANTSNYATRRVLLIKCSDEL*
Ga0153942_1024787	Ga0153942_10247873	F054614	MSLTLTLSGKSTVLAANYFPAIDLSDDDYELGLVIFETYHTIPNVNNSNNKFYFAKDDVEITIPEGSYEVRDINEFLKRAILRK
Ga0153942_1024857	Ga0153942_10248571	F091124	KMLSSTVLVSEDDKRVSKNKGIEAARYRVNNGNRVLMLLIGSECS*
Ga0153942_1024928	Ga0153942_10249281	F013487	MATY*FMIG*FDNKSAQKSKVRQVAKDVVKSEVYSQIYSP*
Ga0153942_1026868	Ga0153942_10268681	F010439	KKNSMEFFLGLDYYLYYFTVAVLLLVHDHMLFQNVLWSLDLIT*
Ga0153942_1026974	Ga0153942_10269742	F091122	ELPEESSVYKYTLEYVTTHLLEEFSKNRIRLLKGCSILYIQVLLAMKCSKDQGQKYRSRQLIKYYIIII*
Ga0153942_1029434	Ga0153942_10294344	F035582	GLEKLESHKGVTVKTLLNSGVTGLFIDTKFTKEKRFKLEKLKIL*
Ga0153942_1034005	Ga0153942_10340051	F008928	EDKCSYKTSSQKPSPLGPSKNKNQSFRAQLIKILEEDSDDPDFPPEDIKINSASIEEIPDPVPPSGKGKGTPKLNFPLGL*
Ga0153942_1036244	Ga0153942_10362442	F081966	VDGTVNTGGAIMHQVKCNMFFKGHMERARIDVCNLGKMELILDMP*
Ga0153942_1036430	Ga0153942_10364303	F024689	EFSQELPREFTAKLLYSWRKKRYEREKEKRWDKNWNQWKNSSEQGNLKGGPCYETPKKGIVSQAFEYLIQNLKMYNGVEI*
Ga0153942_1038409	Ga0153942_10384091	F010439	MFKKNSMGFFVGLEYYLYYFTVAVLLLVHNHILFQNVL*
Ga0153942_1038955	Ga0153942_10389551	F088012	ATISEQSHIELLDTTTGEVISRTDIVKENYDDMKIAFSPDEDQVAFLSRSLITICDTVRPNNRVSFNPWPGKHVWFWEVAFQTCNDLVICGDDYDSALVQVWHRQDPAGFKCTYSLDIKIERHWHSLPAPDGLTVVIVPWYSSAKCYSWNHDTAQFHPIDFVDNPVYIDVPRYSPDGRLFACWSGDDSHVRVWDTRTGQLVSKFPTSEVYGTAFSPTLIEHSPSDRLIALEHHSEISLYGIYTNHLYAKIFDGGGENMAFIRDGTKLAQYSHEFGLKAWDIADLTDEHWHSAHGYELMPCNMTDGWVVGRDNERLFWVPVEHRENLCVQL
Ga0153942_1039357	Ga0153942_10393571	F000950	SKNKNQSFRAWLMKMLEEDSDNPDSSPEDVKINNMSIEKIPDPVPPSGKRKGTPKLDFPLGL*
Ga0153942_1044922	Ga0153942_10449221	F023015	SVFTELSADQSVITKSPDTKLLISQELLTVIICFNDHHEALFNALLSAINRSRGDKIPWRYKVLNVCT*
Ga0153942_1045757	Ga0153942_10457572	F008983	MQAYKALHLNKAQGAIFGPEAIGEKSGGKKDPDTMEIDEIQR
Ga0153942_1046262	Ga0153942_10462622	F008928	SQKLSPLGLSKNKNQLLKVQLMKILEEDSDNLDFPSKDVKINSALIEKISNPVLPSGKGKGMPKLDFPLGL*
Ga0153942_1046739	Ga0153942_10467391	F054614	MSLTLTLTGTTSILTASYFPALDLSNGEYDLGLTNFETYNAIPNVTSTNNKFYFDTDDKIITIPEGSYELSAINKYLRAAILHTQQRTLN
Ga0153942_1050651	Ga0153942_10506513	F079422	VKDLGLCHRIERGVCTKKGKGVLLVEGGKGGSTDICRGSVEERIHLTLQVTPNVTSTLCGEKGWHAENGTRLSTYKPVDNKKWVSLTSHHRYTG*
Ga0153942_1051090	Ga0153942_10510902	F091122	VRVTRVELPGESSVYKYTPEYVTTHLPGESSENRIRLLEGYSTLYIQVPLATECPKGQGQECRSR*
Ga0153942_1053255	Ga0153942_10532554	F081966	VRNIDGTVNVGEAIMHQVECNIFFKRYIERVRMDVCNLEKTEVI
Ga0153942_1054132	Ga0153942_10541322	F102228	MSRTQAGILVPVARMASASALIEIVNHKSMVPEPGWFNRDRKTFED*
Ga0153942_1058662	Ga0153942_10586621	F065291	CPLDESIDSSTMETLRFCHSESTSDTEADILRDDRRAISVSEEIHEEAR*
Ga0153942_1060922	Ga0153942_10609221	F088012	ELDLENLAMNQADTIDTQTDADVPQSIAFSRSGNMVATISEQSNIELLDTTTGEVVSRTDIDKQDYNGMRIAFSPDEDQVAFLSESLITICDTVHPNNRVSFNPWPGKRVQSWDVAFQTRNDLVICGDDDESALVQVWHRQDPAGFKCTYSLDIKIENHWRSLPAPDGLTVVIVPRYSSAKCYSWNHDTAQFESIDFVDNPVDIYAPKYSPNGRLFACWSRNDSHVRVWDTRTGQLVSKFPTSKVYKTAFSPTLI
Ga0153942_1061380	Ga0153942_10613802	F081966	GAIMHQIECNMFFKGHVERARIDIYNLGKTEVILGMP*
Ga0153942_1061636	Ga0153942_10616361	F024689	MAKLLYGWGKRKYKRKRERRWNENWSQWKNSLGQGNLKGGPYYESPKKETVSHTFKYL
Ga0153942_1067993	Ga0153942_10679932	F054614	MPLTFTLNGKSTVLATYYFPAIDLSDRDYELGLAIFETYHTIPNVNNSNNKFYFAKDDAE
Ga0153942_1069479	Ga0153942_10694791	F044130	MFMVLTDTDNVGKTDAELLIFDVSDDALERAAPIIGGVASVVTLNFGTGIIGNCGCPCIED*
Ga0153942_1074125	Ga0153942_10741252	F035408	KGLQLEITMDDPKVFVTPLTARVTYRPVISKWQEELCADNPVEHYKGEWIGLPTAAHPDF
Ga0153942_1077348	Ga0153942_10773481	F083492	VHQGTSLLLKNYIDQVLNRAINHYNSALTTAYNRIATLETEVICLQRELTRLSRGNITSKTKVPEPPTFVGSENKMHLHNWLS*
Ga0153942_1077624	Ga0153942_10776241	F035583	SKDQYYVQTLRTLYLHGILLPWVLFMTERSALKRASRWLLKQTITLSGSQDIRNLVSGDLVITD*
Ga0153942_1081239	Ga0153942_10812392	F000950	KMLEEDSDNPDSPPEDVKINSASIEEIPDPVPPSRKGKGTPKLDFPLGL*
Ga0153942_1083738	Ga0153942_10837381	F010439	MFKKNSMEFFVGLDYYLYYFTVAVLLLVYGHMIFQNVLWSPDL
Ga0153942_1084309	Ga0153942_10843091	F027070	VKEGIQKKEVGKNASTKNLGLCYRVEGGIYTKKGKGILTVQGGKKGGASICRRPAKERVYPPFQVTPNVTSTLCSKKEWHTENGVGLSTHKSVDDKEWVSLTPHCRHTGWGRKEEGVYKA
Ga0153942_1087247	Ga0153942_10872473	F010439	PRWMFKKNSMEFFLGLDYYLYYFTVAVLLLVYNHMFF*
Ga0153942_1097141	Ga0153942_10971411	F070730	MDNFYLQSCNPIVYGSQGTIIMVDYSIKHLINVVLEKKRSFLIYISQHLYLSFILGYVLSAYAIFDKRIPILSTKIRKGNSSSKVVKS*HIYLSN*
Ga0153942_1097271	Ga0153942_10972711	F012417	LLDELAKEESKVESAEQLFTKIRNDFGETLEEERKIEQLRTIEQGERT
Ga0153942_1099076	Ga0153942_10990762	F000950	MLEENSDDPDSPPEDVKINSASIEKIPDPVPPSGKGKGIPKLDFPLGL
Ga0153942_1101321	Ga0153942_11013211	F018792	VKTQAYCDLTKLEDQVKAAHQKNDTKTLEALSRQAQSLLDKLGPEYFKLMDGLERVDPKSSKAKEFMSILSELDKRCTK*
Ga0153942_1101414	Ga0153942_11014141	F001529	KQMRRLTPPRNDGVIAVLLAATFLVGMTLGGVLSAHKTEPIQIASMD*
Ga0153942_1103444	Ga0153942_11034441	F048691	MIHSRTMVIRFHTKYLPSVYSTQMTDQYGLSPEDYVDDLKILSHSYYGQGMLFLILFYLKQQLEHFQVIIATLMLYDFIYHIPQQVSLSICK*
Ga0153942_1103997	Ga0153942_11039971	F083492	HQGTSLLLKNYIDQVLNGAINHYNSALTIAYNRIATLEEEVTCLWEELTRLSGGNIASKTKVLEPPTFAGSENKIHLHD*
Ga0153942_1105067	Ga0153942_11050671	F000488	MPTIKNTKTLAECLSLKKESVTEKLLLERIGMESTPPTKLYDKLIEADPCWHKVDNFYFVSCLLELHFCKTKKLLYIKEYKELLEPTLDCISLFFTKMSENKTWAEDLQYDSLWKWF
Ga0153942_1105692	Ga0153942_11056922	F054614	MSLTLTLTGTISILTASYFPALDLSNGEYELGLTNFETYNAIPNVTSTNNKFYFDADDKIITIPE
Ga0153942_1109903	Ga0153942_11099031	F035581	KGMEVMLILANYNYVCWGARYLPSQVPTVLLTTALIIGLNYHLKERIPTLDSFLEVTVTLLHVPLTMEYSTRFLLRKQ*
Ga0153942_1110275	Ga0153942_11102751	F023015	TNFIWTITPGILDQFQQSKWPPKALKKNLPNGTKNISKQSVFTELLVDQSVITKLPDTKSLISREPLNIIVCFNDHCEALFNALLLVINRSQGNKIP*
Ga0153942_1110280	Ga0153942_11102802	F008928	YDKPGNEDKRPYKTSSQKPSPLGPSKNKNQSFRAWLMKMLEEDSDDPDFPPENVKINSMSIEEIPDPVPPSEKRKGTPKLDFPLGL*
Ga0153942_1110546	Ga0153942_11105462	F027070	LEVGEGIQEKEVRKNASTKNLGPCHRVERRIYTKKEKGILTVQRGKGEGASICRRPAKERIHLSFQVTPNITSTLHSKEGWYMENGAGLSTHKLVDDKEWVSLTPHCRHTGWGRKEK
Ga0153942_1110718	Ga0153942_11107181	F000488	MPTIKNTKTLAEYLSLKKENVTEKLLLERIEIEPTPSTKLYDRLVEADPCWYKVDDFYFAFCPPELHFFKTKKLLYIKEYKELLEPILDHISLFFTKISENKTWAE
Ga0153942_1112708	Ga0153942_11127081	F023015	MATESPQEDLSNGTKNVSRQSVFTKLLVDQPAITKLLDTKSLISQEPLDIIIHFNDHYEALFNALLLAINRSQGNKIPWRYKVLNVCT*
Ga0153942_1114330	Ga0153942_11143301	F000488	KKESATKKSLLERIGIKPTPFIKLYDKLIEADPCWYKVDDFYFVSCPPELHFHKTKKLLCIKEYKELLEPILDRISPFFTKMSENKTWAEDPQYDSLWK*
Ga0153942_1114486	Ga0153942_11144862	F035582	MKVGLEKLENHKGVAVRALLDSRAIGLFMNMTFAREKGFKIEKLKKPLLVRNIDG
Ga0153942_1115290	Ga0153942_11152901	F081965	PFRSIPSRSVIENSKKITKNFKKLKITIMDSLEAIIGREMMRIRENKNFRSVSFLHDA*
Ga0153942_1116085	Ga0153942_11160851	F103367	MTDGSGIFVALTSCRDEERVEEFLTWYEEVQFRNALAVDGVDAATLYRSTEPGEPGFLAIYSLTGDVADTAARFRAAIEERHASGDLTELLEVRFAGAFKVEKRMTSSLSGSPVSEDVDGP*
Ga0153942_1117939	Ga0153942_11179391	F079422	VEKGIRKKEVRENTSAEDLGPCHRIERGVHTKKEKGVLLVEGEKGGSTGICGGSVEERIHLTFQVTPNVTSALCGKKGWHMENGTRLSIHKPVDNKEWVSLTPYCRYTG*
Ga0153942_1119986	Ga0153942_11199861	F050060	ILVDFITKLPLAQGYNAILVVCDHFSKMAHFIATTEKTSVEGLAKLF*
Ga0153942_1120015	Ga0153942_11200151	F008928	LGPSKNKNQSFRVQLMKMLEENSDDPDSPPEDVKINSASIEEISDPVPPSGKGKRTPNWIFPWDCRG*
Ga0153942_1121119	Ga0153942_11211191	F017889	MRYSQLSGQQILLALSDSHNVIAAITKYQASLASGTGLAIDDSPRIELMAANLKVVEKIRTEIRALERELDRQEGAEKSRV*
Ga0153942_1124973	Ga0153942_11249731	F028450	METRDVLLKADKVVLVIERISDGKIRVTTTSWDDAKVILPNQVLEAAVIGKQVGLVRVDKPVAYLDIDDTGSSERVTVRNRDASQRDVTTFNSKLSRCD
Ga0153942_1129666	Ga0153942_11296662	F054614	MSLTLTLSGKSTVLAANYFPAIDLSDDDYELGLAIFETYHTIPNVNKSNNKFYFAKDDVEITIPEGSYEVQDIK*
Ga0153942_1131657	Ga0153942_11316571	F008285	MGKADSLSRRPDWQEGVEKNNKDRMLIRPEWVRGVETVIEEGDLRKRIKKAQEGDKRVVKAVEELKKAGVK
Ga0153942_1132124	Ga0153942_11321241	F071521	MPAGMFIIGLVLLWVGVSSRLARREHRNAELAALDYPVRVATFWERDATAAREAHFDKFLEHKNWRNNLRFELTNWTLFGIGAALCLLGVVLSLGDDQSHT
Ga0153942_1133108	Ga0153942_11331082	F030113	LALVVATVIPFTALIGAGLWSQWQSDQASAIAQAVGDARMLASQIDDQIGNLENLLTGLSEAVSRNPLDREANDA
Ga0153942_1135224	Ga0153942_11352241	F010439	MFKKNSIEFFIGLDYYLYYFTVAVLLLVHGHMIFQNVLWSPDLVT
Ga0153942_1136884	Ga0153942_11368841	F005805	MIAILQQQVNTMLLQQQGSRVEVAKPQTFSRRIEEVSTFVNVARLYIRMKMAEEAA