3300012087: Attine ant fungus gardens microbial communities from Florida, USA - TSFL043 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012087
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175768 | Ga0153959
• Sample Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL043 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287798639
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	5
Not Available	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: Florida, Wekiwa Springs
• Coordinates
  • Lat. (^o): 28.7083
  • Long. (^o): -81.4874
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F002822	Metagenome	527	Y
F004539	Metagenome / Metatranscriptome	433	Y
F010514	Metagenome	302	Y
F018337	Metagenome / Metatranscriptome	235	Y
F031319	Metagenome	182	Y
F042254	Metagenome / Metatranscriptome	158	Y
F048691	Metagenome	147	Y
F054481	Metagenome	139	Y
F066318	Metagenome	126	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153959_1000214	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	35540
Ga0153959_1000479	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	16038
Ga0153959_1002762	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina	2466
Ga0153959_1066978	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	737
Ga0153959_1096766	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	649
Ga0153959_1097061	Not Available	648
Ga0153959_1117745	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	605
Ga0153959_1139254	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	568
Ga0153959_1158009	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus robur	541
Ga0153959_1158014	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	541
Ga0153959_1162480	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	536
Ga0153959_1179120	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus	516
Ga0153959_1182272	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153959_1000214	Ga0153959_100021440	F054481	MSAIDIYAITNSSDEEFPELLLLRHVDIELHPRGISRPLVGRNGIYLLGIHNCGAIRIYVSHNTTIPPTTEVLGPLESVSGLTISHRQFGTMVSFSYENHHRIQMATYDLASHPSHYRWLQLNILEISNNRTIVKDLAGLDDNAGRVVIRRSGADNRFLVMDII*
Ga0153959_1000479	Ga0153959_10004794	F000950	MKLLEEDNDDSESPLEVVNVNSASIEKIPDPVPPSGKGKGTPKLDFFLGL*
Ga0153959_1000518	Ga0153959_10005185	F066318	MQDLAEGMCILATKLDRLKEVPKSDELHLTIGEFPGMMEEVASFVEKWLESWLGVCSAA*
Ga0153959_1002583	Ga0153959_10025834	F048691	MEDQYGLTPENYVYDMKTLSNKHYIQGMLFLILLFLKHRLRPFQAIVVTLMLYDFIYHIPQQVRLSIL*
Ga0153959_1002762	Ga0153959_10027622	F002822	MEKTNTLSDEKDTLKETTYGNLKKTYKMQAKSCRSIFRVFQKQDNFSTELKPREGVMSQTSFGHNSTDTYTISTV*
Ga0153959_1066978	Ga0153959_10669781	F031319	MSIWEGETLKAYSNRYWEMFNEIKGKYNDMAISTFKDGLPIEHDLRKSLTGKPITSVCQLMDQV*
Ga0153959_1096766	Ga0153959_10967661	F031319	MYNELDENDDDVAISTFKSGLPTEHGLRKSLIGKLVANVHQLMDRIDKYKRVEED*
Ga0153959_1097061	Ga0153959_10970611	F010514	VKRILVSNSVRTQPAQENFEKISIKIHKIKKYISGIIFSQNGKRL
Ga0153959_1117745	Ga0153959_11177451	F018337	MRAGTLHTWITRHIAVRQRLERICTSYLLFLMVATTKHSLTEAARFAGLHPSLFAKLLHSHAQVAITTLESLSKTQARQFAKPLERVHGLPWKIVIIIDATLQ
Ga0153959_1139254	Ga0153959_11392541	F042254	MRAWAFFSPRLDPVLDRGKGHKYPVVSPQMPAGRTIGQAVLDHNPHCQIDHTVRVVTARWRQIREVGAKVLATLRTVMLRIRDDKIPRTPEVEIAQVVQRPLRLLVSIG*
Ga0153959_1158009	Ga0153959_11580092	F031319	MHDEETLKAYSNRYWETYNEMEENFDDVAIITFKNSLPVDHGLRKSLIGKPATSMRQLMDRIDKYKRVVEDQL*
Ga0153959_1158014	Ga0153959_11580141	F031319	YAERYWEMFNEIDGNFDEVAIRIFKVGLPPEHGLKRSLIGKPVTSLRQLMDRVNKYKRIEDDQQ*
Ga0153959_1162480	Ga0153959_11624801	F031319	MYNEIEGNYDDVALSTFKRGLSTNHDLRKSLTGKPVTSVRQLMDRIDKYKRVEEDQQM
Ga0153959_1179120	Ga0153959_11791201	F031319	MFNEIEGDFGDIAINTFKLGLPAKHGLRKSLTGKPVTCVRPLMDMIDKYKRAEED*
Ga0153959_1182272	Ga0153959_11822721	F004539	KFLGGFSRFCCREVPVVGSGFGVHTMHHFVLPKLRLVFSQRTCPIHFFRPKTKFLGGFARFCCREVPVVGSAFGVRTMHHFVLLKLRLVFSQRTYPIHFFRPKTKFLGGFARFCCREVPVVGSGFGAHTMHPLCFLSCVLFFRDEHAQSTS*