3300012075: Attine ant fungus gardens microbial communities from Florida, USA - TSFL001 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012075
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175728 | Ga0153917
• Sample Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL001 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173489236
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: Florida, Paynes Creek Historic State Park
• Coordinates
  • Lat. (^o): 27.6206
  • Long. (^o): -81.814
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048028	Metagenome	148	Y
F054481	Metagenome	139	Y
F061419	Metagenome	131	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153917_1022700	Not Available	1103
Ga0153917_1044916	Not Available	711
Ga0153917_1072579	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153917_1022700	Ga0153917_10227001	F054481	MSAIDIYAITNSSDEEFPELLLLRHVDIELHPRGISRPLVGRNGIYLLGIHNCGAIRIYVSHNTTIPPTTEVLGPLESVSGLTISHRQFGTMVSFSYENHHRIQMATYDLASHPSHYRWLRLNILEISNNRTIVKDLAGLDDNAGRVVIRRSGTSNRFLIMDLV*
Ga0153917_1044916	Ga0153917_10449161	F048028	MKSLVESMTILANQLNRVKKAPNSEELCHTIHEFPRIMEEVMDFIQEWLKNWTRMYEFM*
Ga0153917_1072579	Ga0153917_10725791	F061419	PLPASMSGDPPSVILHPKVATSYPSKAVTANLSSPPMPKVVVGFPLLLSQSHCVPGQLEPSSTMLPLGSSDSAFSLQSTLSVRVAIARWKHVDTS*