3300012065: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ007 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175733 | Ga0153923
• Sample Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ007 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81150500
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: New Jersey, Brendon T. Byrne State Forest
• Coordinates
  • Lat. (^o): 39.9179
  • Long. (^o): -74.5218
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003922	Metagenome	461	Y
F049334	Metagenome	146	Y
F069539	Metagenome	123	Y
F078055	Metagenome	116	Y
F083491	Metagenome	112	Y
F089691	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153923_112659	All Organisms → Viruses → Predicted Viral	1197
Ga0153923_122262	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	744
Ga0153923_124467	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	688
Ga0153923_131958	All Organisms → cellular organisms → Eukaryota → Opisthokonta	556
Ga0153923_132369	Not Available	551
Ga0153923_133644	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Polyporaceae → Trametes → Trametes cinnabarina	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153923_112659	Ga0153923_1126591	F089691	MIMGNIRNLIREVEPCYEDFSLYFDHDGLTEAGGSYNYNLFIVSQSRNRKGFNENEYDNIRNEIENLLELYVDIENKSNYYAQYPSVGSMLFDYELIDNIHNTKRIKDFTKFFAECCEKPKSPYANYHDNFTAYNEEMTAKYLTLKTGKEWDVDEAHGYNQGDYVKMVYCKEHYKDGTKNYGEIWLGAGKEFCVIDLDESGEEGSAHYGYIVADCQACRDEDYKKLICE
Ga0153923_122262	Ga0153923_1222621	F069539	VIEEGDLRKRIKKVQERDERVVKAVEELKKAGVKTLRDEEWEIKDGVVLKEGRIYVPEGELRGEII*
Ga0153923_124467	Ga0153923_1244672	F003922	VSSQLASNNLYSVLCPEKLEKKFNCTNTTERVRDVWCILWLLREVWMRVGLEKLENHEEVAVRALLDSGEIGLFMDTTFA*
Ga0153923_131958	Ga0153923_1319582	F049334	VKTVEELKKTGVKMLKDEEWEIEDGIVMKEGRIYMPEGDLRREIIQLHHNTPVGGHGGR*
Ga0153923_132369	Ga0153923_1323691	F078055	VVNIGRIHRYIEQVEGQRKEQPAPVIIKGEEEWKVERILNK*
Ga0153923_133644	Ga0153923_1336441	F083491	YQMKFPKTIRHYSSLVQENLENPCKTGTMRMDYYCIEGRFIFPIVWKTPCDNRSLRYTTICYPPDTQVGGRPMGWSPEITGGLG*