NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011990

3300011990: Human oral microbial communities from Los Angeles, CA, USA - S31-01-D



Overview

Basic Information
IMG/M Taxon OID3300011990 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0113963 | Gp0134651 | Ga0119820
Sample NameHuman oral microbial communities from Los Angeles, CA, USA - S31-01-D
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Los Angeles
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size230871347
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities From Los Angeles, Ca, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046431Metagenome151Y
F063778Metagenome129Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119820_1010346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces2819Open in IMG/M
Ga0119820_1025057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1292Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119820_1010346Ga0119820_10103464F063778MPETISEEAQQELLRQLQDALGLVKNADTSALDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYAISNIEAIPLDPPLED*
Ga0119820_1025057Ga0119820_10250572F046431MYKLRKILVTITLVILIITYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDLSREALDEEVKVLNIYPTSDYYNQAVSATGASIPNITVTYLDGQTETIPKSALLKVWMEGRNSNRRKYSNKLSGIW*

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