3300011990: Human oral microbial communities from Los Angeles, CA, USA - S31-01-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011990
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134651 | Ga0119820
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S31-01-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 230871347
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046431	Metagenome	151	Y
F063778	Metagenome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119820_1010346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2819
Ga0119820_1025057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1292

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119820_1010346	Ga0119820_10103464	F063778	MPETISEEAQQELLRQLQDALGLVKNADTSALDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYAISNIEAIPLDPPLED*
Ga0119820_1025057	Ga0119820_10250572	F046431	MYKLRKILVTITLVILIITYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSNNFETIGLTDLSREALDEEVKVLNIYPTSDYYNQAVSATGASIPNITVTYLDGQTETIPKSALLKVWMEGRNSNRRKYSNKLSGIW*