3300011985: Human oral microbial communities from Los Angeles, CA, USA - S12-01-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011985
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134623 | Ga0119793
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S12-01-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 217094472
• Sequencing Scaffolds: 7
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F063778	Metagenome	129	Y
F084362	Metagenome	112	N
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119793_1000004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	262330
Ga0119793_1000372	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43912
Ga0119793_1000486	Not Available	36977
Ga0119793_1002224	All Organisms → cellular organisms → Bacteria	10607
Ga0119793_1038149	Not Available	962
Ga0119793_1044052	All Organisms → cellular organisms → Bacteria → Terrabacteria group	846
Ga0119793_1046985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	798

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119793_1000004	Ga0119793_1000004132	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGKDRSVLFATRNDDKQAHLPDMIVTQGGK*
Ga0119793_1000372	Ga0119793_100037210	F027205	VASRLIVTADDILKAVKESEEFEKKALSEARKRDRAESKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*
Ga0119793_1000372	Ga0119793_100037213	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGQYSQQIHFDLPDDTEVSFYKTPNVIYADILFADGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0119793_1000372	Ga0119793_100037217	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLFHEEVK*
Ga0119793_1000372	Ga0119793_10003729	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENAEWAADVHRYF*
Ga0119793_1000486	Ga0119793_100048646	F084362	MNCTFTVRWSDEKNKPHSKTYETEVAAKKAKKWLLEHGVRDVDIAVRVNNKPAGSLQDSEKQPETAAEQKGFWWEK*
Ga0119793_1002224	Ga0119793_10022243	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHAILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS*
Ga0119793_1038149	Ga0119793_10381491	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGGTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHNFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0119793_1044052	Ga0119793_10440521	F097527	MIYFKMEKIGNSTKTEKKKTRSENLVFFTIPAAGVEPARPCGHW
Ga0119793_1046985	Ga0119793_10469853	F063778	MPETISEEEKQELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYAISKVEAIPLDPPPED*