3300011983: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-10

Overview

Basic Information

• IMG/M Taxon OID: 3300011983
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0134405 | Ga0120685
• Sample Name: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-10
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117719696
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -73.99
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056961	Metagenome	137	N
F063346	Metagenome	129	N
F067504	Metagenome / Metatranscriptome	125	Y
F092080	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120685_1006323	All Organisms → cellular organisms → Bacteria	968
Ga0120685_1015965	Not Available	707
Ga0120685_1021577	All Organisms → cellular organisms → Bacteria	638
Ga0120685_1043190	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120685_1006323	Ga0120685_10063231	F056961	MNVEHRTSNFEHRIMYSTIYNKDKAKRLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEVTNKAAYYGEITYTGQEF*
Ga0120685_1015965	Ga0120685_10159651	F067504	MYKIYGSFIETERAKINGMVGKKVIDQALEGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAADTLLTLLGMNDDQPEEDTSD*
Ga0120685_1021577	Ga0120685_10215771	F063346	MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYPVEITYTGQKF*
Ga0120685_1043190	Ga0120685_10431901	F092080	MVLMCIYIPYKGGKGMQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLKWGEEDNQRGAAKERVLNVLVKEKPLGKWEDIHRERTEADADRS*