3300011981: Human oral microbial communities from Los Angeles, CA, USA - S01-02-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011981
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134608 | Ga0119778
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S01-02-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191617173
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040685	Metagenome	161	N
F043991	Metagenome	155	N
F046431	Metagenome	151	Y
F070224	Metagenome	123	N
F092231	Metagenome	107	Y
F095630	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119778_1000190	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44283
Ga0119778_1000811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	20229
Ga0119778_1001073	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	17297
Ga0119778_1002122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	10951
Ga0119778_1006811	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4269
Ga0119778_1007115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4127
Ga0119778_1018610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1768
Ga0119778_1030175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1151
Ga0119778_1034260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1028
Ga0119778_1054762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	672
Ga0119778_1059680	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	623
Ga0119778_1065508	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119778_1000190	Ga0119778_100019041	F018385	MAEHVNRWDPYNEISLEDRDPVFDDPIIYGTHVKTVTLTVYSPDGRVQKYWNARILKDLLGYVRIACPRDGKILKFNWMDWTAYFFTSHGLSELVMMPDSSRKTVTQLHKEVN*
Ga0119778_1000190	Ga0119778_100019046	F043991	MSKKNPSAVDGFDLNGNVIEEAKEFDGVLLEDWVNQRSPLKPSWVGRYSDQMHFDLQDGTEVSFYKHPNVIYADILFSGGGIRTILFKCRQKKNLTRFISRVLKLATMGPSSVHPDLRVDN*
Ga0119778_1000811	Ga0119778_10008114	F046431	MFTYTQILVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGRNSK*
Ga0119778_1001073	Ga0119778_100107324	F070224	YNAPDSIYVATGAVYIPPISGEPIYLFASPLRPAKTRGSKLRARDWVKVDYSYQNNIIIMGFGDSLVIENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHNKKADRYYKYRIALVIYMDYNHPEACIIH*
Ga0119778_1002122	Ga0119778_100212217	F046431	MLSIIITYGSGIIVKAAESDLTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGATQFETIGLTDFSNNATDEEVKVLNIYPDVASIPRVQVTYLDGQTETIPKSALLKAWMEGRNSNRRKYSNKF*
Ga0119778_1006811	Ga0119778_10068115	F095630	MVYSSLYKTVENNGLLAHIYEHLLAQYVVKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALRMFDEWDIPGDAALRVAGECEIEMNRAVVELQQDELLHNLNTVQSSAWCRQSDLTYRKADDKSSVNTLFRVPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPVDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASRSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCDNLQTALVRCSHNYEQVLLGRDTLNSILGGCVIGGKGWLEMADSARIQQMLAAIELDVYGI*
Ga0119778_1007115	Ga0119778_10071151	F033081	MYPPDLMVVHRPRKGIMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALMEEQAFRSGGEKWSWRERVRASVCFGLAHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYHSQIVATAAATTIHALYNVIALSLIAVVAVIYMAISICS*
Ga0119778_1018610	Ga0119778_10186102	F070224	MRRLFFLLLTLLHCTAWSQVYNAPDSIYIIRSGIYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAESPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH*
Ga0119778_1030175	Ga0119778_10301753	F046431	QNLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGTTHFETIGLTDFSNNATDEEVKVLNIYPQEGITDGRLYPRETPEVVSNIFRSIPKVEVTYLDGTRETIQKSALLKVWMEGRNSKRR*
Ga0119778_1034260	Ga0119778_10342602	F046431	IIMLTYTQILVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK*
Ga0119778_1054762	Ga0119778_10547622	F092231	LIQFPWPIQLNGFPAYAEQLGWKPTSRPTWFNVVPEKNDEITILSSSEAGDVYKLFLHMAANDADDVEGAAELNDHFVSCVAAGREAWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFRFFTPEGRWYFL*
Ga0119778_1059680	Ga0119778_10596801	F030786	RTKIHKVVFQMLVVMVVTSSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0119778_1065508	Ga0119778_10655081	F040685	FKLFFALAFVSISLHGQEKIQQVEVHIFGGRALYSSRYTLNSLKKEFNTKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKELKDGPSEQAADGQDKVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*