3300011972: Human oral microbial communities from Los Angeles, CA, USA - S04-06-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011972
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134618 | Ga0119788
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S04-06-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151635846
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119788_1000236	All Organisms → cellular organisms → Bacteria	43724
Ga0119788_1002615	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8373
Ga0119788_1005827	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4062
Ga0119788_1006078	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	3910
Ga0119788_1009229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2563
Ga0119788_1010436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2248
Ga0119788_1010750	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2186
Ga0119788_1017791	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1328
Ga0119788_1032075	Not Available	763

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119788_1000236	Ga0119788_100023625	F036281	MITLIKVDEGPVDIYELRMQYLTKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYFDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTLRMSDDQKSKFTRIAMTNEKGHQTYDWILENVEWAADTIRYF*
Ga0119788_1002615	Ga0119788_10026159	F090516	MKSNLSVELFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKLDIEPIPAEEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKTLEEYTPDEYEGVSEAMAEMMEYTHKIQRAEPVIEIIRQYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADIYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0119788_1005827	Ga0119788_10058272	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0119788_1006078	Ga0119788_10060783	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTNEKTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0119788_1006078	Ga0119788_10060785	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGRALYSRLYTLNSLKKEFNTKPLMGQKEELSKEVSLPNTPKNWEVFIKKINLDKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0119788_1009229	Ga0119788_10092291	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVS
Ga0119788_1010436	Ga0119788_10104361	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYT
Ga0119788_1010750	Ga0119788_10107503	F061927	MKNSIFILSAMFILGACSSDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0119788_1017791	Ga0119788_10177912	F059076	MTHKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVGSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPNSGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDA
Ga0119788_1032075	Ga0119788_10320751	F022002	MSRRLALTLGLLLALLFSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIQEVGIHAGSNDVSYTVTGLNYARRPTFVAGLYFYKGHLRRIVFIFDDLDALEQIESELEDKYGTMIESEGTSKKKSKGIVDAFTTLEVVRRFEYEGHSMFKDAYIAYS