3300011970: Human oral microbial communities from Los Angeles, CA, USA - S12-02-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011970
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134624 | Ga0119794
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S12-02-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119584437
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium oral taxon 488	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051213	Metagenome	144	N
F054111	Metagenome	140	N
F064818	Metagenome	128	N
F066860	Metagenome	126	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119794_1016561	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium oral taxon 488	1132
Ga0119794_1019089	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1012
Ga0119794_1028786	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	729
Ga0119794_1035557	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	618
Ga0119794_1039040	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	574

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119794_1016561	Ga0119794_10165612	F066860	IWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDYLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI*
Ga0119794_1019089	Ga0119794_10190892	F054111	KENMNKPLDNITHEVFLKLIEHLKNLQKFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETKALSTSDRDLFLNILDKEILFLI*
Ga0119794_1028786	Ga0119794_10287861	F064818	NWDFMGERKKYPIPNNINGNTPKLYFTNHKFIVVLLPYFTYMNKDEFLKELIAFIADNSSELHPKIFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEIGDFFEQEMSNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECK
Ga0119794_1035557	Ga0119794_10355571	F040685	MKKLLFKLFFALAFTSISLHGQERIQQVEFSSFGGMALYSRQYTLNSLKKEFSKKLLMRQNKDLPEEISLPNTPENWEAFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTDKKTYRKMNAYGNDHDMETWYDLLQIIAEEFEKI*
Ga0119794_1039040	Ga0119794_10390401	F051213	FVFTSCDWVGNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGKDRSVLFATRNDDKQAHLPDMIVTQGGK*