3300011819: Human oral microbial communities from Los Angeles, CA, USA - S04-08-R

Overview

Basic Information

• IMG/M Taxon OID: 3300011819
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134620 | Ga0119790
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S04-08-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32562474
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F071329	Metagenome	122	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119790_100952	All Organisms → Viruses → Predicted Viral	2690
Ga0119790_104534	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1036

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119790_100952	Ga0119790_1009521	F036281	MITLIKVDEGPVDIYELRMQYLTKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYFDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTLRMSDDQKSKFTRIAMTNEKGHQTYDWILE
Ga0119790_100952	Ga0119790_1009527	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNTNGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVETED*
Ga0119790_104534	Ga0119790_1045342	F018385	MMAEHVNRWDPYAEVPIETHRDPVKDDHLIYGVDVPHFTVTVYSPDGRVNKYWNARILEDLLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFDKEVK*