3300011664: Fossil microbial communities from tooth of medieval black death victim, London UK - 8291

Overview

Basic Information

• IMG/M Taxon OID: 3300011664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118639 | Gp0137833 | Ga0120344
• Sample Name: Fossil microbial communities from tooth of medieval black death victim, London UK - 8291
• Sequencing Status: Permanent Draft
• Sequencing Center: McMaster University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19280091
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fossil Microbial Communities From Human Samples From Several Locations
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossill → Fossil Microbial Communities From Human Samples From Several Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: UK: London
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062732	Metagenome / Metatranscriptome	130	Y
F066815	Metagenome	126	Y
F077781	Metagenome / Metatranscriptome	117	N
F082758	Metagenome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120344_104547	Not Available	824
Ga0120344_104846	All Organisms → cellular organisms → Bacteria → Acidobacteria	794
Ga0120344_106549	Not Available	670
Ga0120344_107110	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	639

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120344_104547	Ga0120344_1045471	F082758	VYVDVNVMRNDKASPGPFYLGYRDWECDTDCVPAAFEASAKELSAMIRYMLELGPAAQTHTVPVAWQSKPLVTSVDKWANTCATKVDKDRVVREYGERFWLNDPSSRTLLSAAWRGCNIFANR*
Ga0120344_104846	Ga0120344_1048462	F066815	LPIFVIPTLKKVKPTFFQSSNSTLSAGLIVEAETDLLVLVLAGGFTITCSMSSLQHQAQRTVTFSDSFGPDAILRVPSVVPSSYGIPGWSSIPPGTCGGQCMMQYKAEAKDETSLSIRIGTTGVGANFGLIPAGLQSFGNSILGNICRSGRPQCCTPGCVIP*
Ga0120344_106549	Ga0120344_1065491	F062732	VSQIDMTLRPSWESDAEFARNWQDYLQRAGVVDSQIRQQLVMQIPAGPNYVVVAWVMDLKAPVLNPAAPTFAIAPVQAKTMEARMLATVDAQRRVIEHFDAAAISEGVPRGQELWFLIDPDGKVLRAGRRTTITNPQAARLAMQKMFPEISVSYVTRGTPVKDAAGKRVPVSWQWLEKTEAGTAQR*
Ga0120344_107110	Ga0120344_1071101	F077781	PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*