3300011366: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300011366
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0153826 | Ga0134118
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150885396
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	3
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Monosiga → Monosiga brevicollis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Point Reyes National Seashore, California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015287	Metagenome / Metatranscriptome	255	Y
F032070	Metagenome / Metatranscriptome	181	Y
F042676	Metagenome / Metatranscriptome	157	N
F069540	Metagenome / Metatranscriptome	123	Y
F098404	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134118_1077843	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	918
Ga0134118_1130431	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	572
Ga0134118_1160620	Not Available	807
Ga0134118_1162928	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	618
Ga0134118_1165843	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	555
Ga0134118_1221112	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Monosiga → Monosiga brevicollis	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134118_1077843	Ga0134118_10778431	F032070	GVDRDKGHNIGFFSFKMTFTANAKTTGVPDFGVIHIDPVETAKAFQTYLNTASKLTGVALDDISTTVITMPADPANVTLADLLKLGMKLFDAIVWITAGRPKSHPLQADPGMTKESISSLHDIARAVFYCYFMLLTQARYPVGRNTSDKPKIPNFLKTIMGMDKEQHHYVEMICSFEPQKFDPAWVKFVSFKDFGQETLSRFGLGLAGKRMFGPFSIYQPRPDIDENLLKAFRFARTVAKAPASWAVHPLTRDPNILTARGNLNKNLANLALEVFTKEDLEEMVKTRVLYAMPAHDPAHRQYLLWD
Ga0134118_1130431	Ga0134118_11304311	F042676	MAQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAISVHAACYIREPAKRQQLSNVLAALNIGNGLIAAWMYKEGILNPLGVSIHSGLSLALGLGFLIYGMREDRRSGELRE*
Ga0134118_1160620	Ga0134118_11606201	F015287	LQSLNGVHFLKPLRTKPGWLAMRSIAVMIFCILGVSGEFIGERGHSWGVNNNQHLIIWGGFFTGGLIEFLALFNFLKEPFWTVIPPIGLCYVGIMLTVHEQLRVFWAYLHLGSGVVTFPAVFILMYLPIRAMANYRKKLENKEIKPNKSSGPMGCLCFWRGRTLEDLNPAYTDLSMYNTPWPAMVAFFLALESMIWFEMAFRMGWWSGERLPPEVPHAEHAFLAMLIGDVIMVLGIFGVTSFIARSIDKFLGNEYESALADIELGVLED
Ga0134118_1162928	Ga0134118_11629281	F042676	NKTLSHTHKTHHKMAQQEYSIGGMITFPQLTASYGLISGVIGAASLINPHLCYDLVGQPSRWVPMLESSSGLYTLRLFGLQTVALAAVSLHAAFNIKETSKRQQLSNVLAALNLGNGLIAAWMYKEGILNPLGVSIHSGLSMALGLGFLVYGLREDRRTGAGEPARD*
Ga0134118_1165843	Ga0134118_11658431	F098404	ETFESKGFVHIKHNGTLYFGEAWYHVSQPDGKALEAFAFGGAEHLNVYELQRFDKGKAFQVIHDEKKPICHTKPLTGKMPQLWDWVEKADYVRNFTTDGTKFDLWSYTTAGVTLEVAVPVGHPDILAFFGRRSANEDFGYYLEEYKNQKPHSTWFEIPRECHLGPK*
Ga0134118_1221112	Ga0134118_12211121	F069540	GQTMLKTVSQSTKRDFDYYNTHHCSPHRITSLDGSEGRSAKRIRTLSYQPEVINENDHKMLDSDGVPDQWSTNWGVHAIDENKFLEWVPKRSRAKYQRASSLRDPVFSTEDVQHILTKAIEETKAILKKEYEQVLQERLNDQYENFVRFNQDHLHRKMEQSQFDYMS*