3300011365: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011365
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0153826 | Ga0151146
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung A8 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79054503
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1
All Organisms → Viruses → Riboviria → Orthornavirae	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Cordycipitaceae → Beauveria → Beauveria bassiana → Beauveria bassiana D1-5	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Point Reyes National Seashore, California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009606	Metagenome / Metatranscriptome	315	Y
F032070	Metagenome / Metatranscriptome	181	Y
F045048	Metagenome / Metatranscriptome	153	Y
F057456	Metagenome / Metatranscriptome	136	N
F059667	Metagenome / Metatranscriptome	133	Y
F072921	Metagenome / Metatranscriptome	120	Y
F105213	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151146_1023670	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1169
Ga0151146_1024181	All Organisms → Viruses → Riboviria → Orthornavirae	545
Ga0151146_1032199	Not Available	737
Ga0151146_1040456	Not Available	690
Ga0151146_1075207	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales	1981
Ga0151146_1100587	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Cordycipitaceae → Beauveria → Beauveria bassiana → Beauveria bassiana D1-5	712
Ga0151146_1107509	Not Available	680
Ga0151146_1113947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1319
Ga0151146_1114668	Not Available	687

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151146_1023670	Ga0151146_10236701	F032070	MVCHYLFCSLLTNILLKKPNDLIGVDRDKGHNIGFFSFKMTFTANAKTTGVPDFGVIHIDPAETAKAFQTYLNTASKLTGVALDDISTTVITMPADPANVTLADLLKLGMKLFDAIVWITAGRPKSHPLQADPGMTKESISSLHDIARAVFYCYFMLLTQARYPVGRNTSDKPKIPNFLKTIMGMDKEQHHYVEMICSFEPQKFDPAWVKFVSFKDFGQETLSRFGLGLAGKRMFGPFSIYQPRPDIDENLLKAFRFARTVAKAPASWAVHPLTRDPNILTARGNLNKNLANLALEVFTKEDLEEMVKTRVLYAMPVHDPAHRQY
Ga0151146_1024181	Ga0151146_10241811	F105213	RACLKIVLDLVSKLCSEPLAKGIRSSQSGMSASNHGWNFFNSFSNELEKQEVFSLLEREETSFEGYVERTDTFNDLFVSSTDYEEATDRLAHNVARDLGVPWMTKCGIPKVLQGIVVETCYKPRQIFFKATGLLEDLGEPTDVKDIHVITLRQGVLMGDPLTKPVLHLINVCDRLLQKRM
Ga0151146_1032199	Ga0151146_10321991	F009606	MSSGNKPKNNAPGQGANVVRTKAKPKVNPVTGANFEYVSEPRIGDSFVVVMAGPGGVQSFTFHHPIGVTDVDDEDWVCTPTGDIPSLLARKDDPDEADRKAKRDRYRLGLVVNAGLLEVSGAEGPLTYPGTGVSRQDALAAARTAAKNAVKAEKGKPAPDLYIRFLPVEVQEAEVAVRKMLADKATIQEAEKKFPASGYRTRSGPLADRDQREVEYLTGTTRSQASDAVVKRIFGLGED
Ga0151146_1040456	Ga0151146_10404561	F009606	MSSGNLPAHNDSSRGPNVIRTKAKPKINPVTGANFEYVNESRIGESFVVCLAGPSGVESFTFHHPIGLTDVDYEDWVCTPTGDIPSLLSRQVDPDEADRKAKRDKHRLDLCVEAKLLQRDGIDGPLTYPDTGVKRQDVLAAARTAAKDAIKADKGKPSPDLYVRFLPLEVQEKEVAVRKFLATPSTIRKAEAKYPASGFRTRSGPLADRAQLGVDYLTGKTRSQ
Ga0151146_1075207	Ga0151146_10752073	F059667	MKGKTKCNAKNLFKVALLTENPPQINSTISCPIHGIALIRLVITVAPHKLI*
Ga0151146_1100587	Ga0151146_11005871	F057456	IIQDLSLLYLVILCPAYATVRFVDNQTVRQDLAVELFRCKQRLF*
Ga0151146_1107509	Ga0151146_11075092	F072921	MKKKMTLSTDRKSASEGEYIEIRWTCDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGIISGKKVIESVDVRVKCAKRAKPNAPLSSRMKMFGEKMKAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDQVQTAYLMR*
Ga0151146_1113947	Ga0151146_11139472	F072921	LSIDSGCTQYNIAVSDSGTTRIPVPRSNGKMTVKLIGVISGKKVTESVDVRVKATKNARTKAPLSARMKMFGEKMQAKWYVFRAQMKYWWLSQKKWQKALWIALLVLWLGLLFSSIGRKPEAKVSSDKIQTAYIFS*
Ga0151146_1114668	Ga0151146_11146681	F045048	VFNKGSSNGFIADIPNGGQAQPNSTVGAKALWKNAQKIATKNKASDTINKATPIFIPRWTELVWSPK*