3300011297: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN I3 S16 L6_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011297
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127494 | Ga0138401
• Sample Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN I3 S16 L6_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48158882
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025846	Metagenome / Metatranscriptome	200	Y
F076161	Metagenome / Metatranscriptome	118	N
F097512	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138401_1016020	Not Available	838
Ga0138401_1019262	Not Available	752
Ga0138401_1077792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	593

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138401_1016020	Ga0138401_10160201	F097512	SAPETLEKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEVGGY*
Ga0138401_1019262	Ga0138401_10192623	F025846	GNVMAGQTVPMVEMKPTVLLHHVKIKDYGIVEMDSVFQHPMFVMDQTNFVTLDGDLTVLMAQMKA*
Ga0138401_1077792	Ga0138401_10777921	F076161	LKSINFSSRYPKTGFRAFAEKPVVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIATDPKERSNLLSSPTNPDAPTGKPI*