3300011280: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT37 metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011280
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0127487 | Ga0138372
• Sample Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 NT37 metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17410433
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009310	Metatranscriptome	319	N
F021307	Metagenome / Metatranscriptome	219	Y
F029011	Metatranscriptome	189	Y
F064419	Metatranscriptome	128	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138372_107258	Not Available	548
Ga0138372_120032	All Organisms → Viruses → Predicted Viral	1098
Ga0138372_122769	Not Available	543
Ga0138372_137643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1191

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138372_107258	Ga0138372_1072581	F064419	TKKFEFNGKEVATVDFDSSSKKASHTMHLPSGKDLTIDLAWPKMTPAASDLEFGITITPDRKVVTKFGWEMAGVKKVYLDVVGNNPWMGDYKLSRQGEFEEVSGSVYKIKWTGHGETTKGFLRRVSPVETNVVASVNVRNMKVDAIVWKSFAGQKYGFTLTNDKFTLLAGKH*
Ga0138372_120032	Ga0138372_1200321	F009310	YKFIQKFMFLADRPQEGSFVLYRKMEGGMWKTKVTVDNNNMMPKPFLDISVESDRKTKLHVLFNFQEDNKWELKVDRVPGQKMTIEATVNGKKWTGVGNLNQGEMKLNLKIDSEFTGKHYTLDFDLNPSGMWGIHITGDVDGPVDAKWTMQKDYTMGEIVVKYKNQNYAFMQLKGNAEMRGVFPVVFDYVVKYNIKDAMEHQGKAKMKFDGKTPAKKFEMSFAPKTGTPMDLIWNMDFSSGFKYDYDFKMNAVTMEKGNGEYKWVNNGQKFELMTKDTFIVTKQSPFHWMNTMVTGGREWTKMEHTRNIFFDKVNKAQMINKMKIEEHNILDGQTWYHIKYDNTAPKTAFLFTYLPYNMDQAWTY
Ga0138372_122769	Ga0138372_1227691	F029011	VSTTGFGFLTFDWVAPPVSDTSVKSDFLHSFDIFSKFVIQVVTGHLAVFAVFPVSLSVQEPSWDFEVLWVSHNSLDLFHFGFGQLTGSFGSVDFGFFQDQVGESSTHASDGSQSVGDLDVTVDVGVLHSQNVLKIFRVDKGHDRCFFFSF*
Ga0138372_137643	Ga0138372_1376433	F021307	MNQILYENRCKCNEEISIIRKRKLTTRSEGKPFQYPKPNEILSKTFQIKYEKKLSSTARVILNSFHNKYIYYAIDDILYLLKSNKRER