3300011274: Marine microbial communities from the Southern Atlantic ocean - KN S15 250m_B metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011274
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125891 | Ga0138378
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 250m_B metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2672901
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021393	Metagenome / Metatranscriptome	219	N
F076161	Metagenome / Metatranscriptome	118	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138378_11692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	534
Ga0138378_14074	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138378_11692	Ga0138378_116921	F076161	INFASRCPKTDFRAFAENPVAKSLLLPQFGGQKVPPQGASIPYRLTAWTVPQIAADPKERNNLLSSPTNPDAPTGKPV*
Ga0138378_14074	Ga0138378_140741	F021393	VKSGFDTLTEVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPNAALETVDKSIKDSSLILKDARAEGFEGLSVVARNILSGKYYVPSDDEVRGF*
Ga0138378_16377	Ga0138378_163771	F103410	SRSLVVKKCRPKGLQSLIASLPGLSHKSPQTRRSAATCFLAQPIPTQPRASPFDALISLPAQHVLGRTPEGTSRTVLTDQIGLPKVSRPPQRRTFLHHPEASLEHASFRLPYHKTARKLFSNTADHFCQHLRRHARVPDPCLAHRHSNDPKITFLPISLAFDRLAQGPHDPGHTTPKGFACRFGCSTDPLLPGGIATTMSQPSQSTQRLLGHLSLCRTIRPEGHIEGFGSRNTIHFNHSKVTRSGTFQPFPTNGWFTYPGLSAPQRPRCVMLKLLKAVA