3300011260: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, permeate

Overview

Basic Information

• IMG/M Taxon OID: 3300011260
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173498 | Ga0151659
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, permeate
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187276940
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	15
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.1316
  • Long. (^o): 137.71844
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F004850	Metagenome / Metatranscriptome	421	Y
F005564	Metagenome / Metatranscriptome	396	Y
F007892	Metagenome / Metatranscriptome	343	Y
F013764	Metagenome	268	Y
F015742	Metagenome / Metatranscriptome	252	Y
F017160	Metagenome / Metatranscriptome	242	Y
F023829	Metagenome / Metatranscriptome	208	Y
F029758	Metagenome / Metatranscriptome	187	Y
F043410	Metagenome	156	Y
F054555	Metagenome	139	Y
F056896	Metagenome / Metatranscriptome	137	N
F061521	Metagenome / Metatranscriptome	131	Y
F062159	Metagenome / Metatranscriptome	131	Y
F069050	Metagenome	124	Y
F071990	Metagenome / Metatranscriptome	121	Y
F072257	Metagenome / Metatranscriptome	121	Y
F085725	Metagenome	111	Y
F095491	Metagenome	105	Y
F096595	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151659_1002280	All Organisms → cellular organisms → Bacteria	8394
Ga0151659_1016101	Not Available	699
Ga0151659_1025466	Not Available	2652
Ga0151659_1029197	Not Available	533
Ga0151659_1032420	Not Available	842
Ga0151659_1054453	Not Available	777
Ga0151659_1061739	Not Available	519
Ga0151659_1064140	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW	980
Ga0151659_1077638	Not Available	517
Ga0151659_1079119	Not Available	534
Ga0151659_1096759	Not Available	990
Ga0151659_1116115	Not Available	644
Ga0151659_1120004	Not Available	587
Ga0151659_1136949	Not Available	595
Ga0151659_1148407	Not Available	702
Ga0151659_1150246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	677
Ga0151659_1176305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	606
Ga0151659_1177832	Not Available	693
Ga0151659_1222647	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	582
Ga0151659_1255879	Not Available	678
Ga0151659_1268167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151659_1002280	Ga0151659_10022802	F085725	MNLLLVSFLLLISAVAIGFYLVYLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIFTGPIDKLNNVAALLLFLAILGGGMVFALNEENKPPSMAAVTAHAIMGLVGISLLIINLF*
Ga0151659_1016101	Ga0151659_10161012	F096595	MDSIIKFGQFVKHNRLKKGMTQKELSLKVFDKPNGEYIGKLERGVVGGITFATADKIMLALDSELEFREDEMFRPDLSQP*
Ga0151659_1025466	Ga0151659_10254663	F071990	MAEPTTRFRLIPQSTAVAAVDTAAERLAAIASESIVSTGDGNEADFGTIDISGGAANSSVLTILWDITADGGNTLAETFKLWLSDNGFDQAGSVLKVQPLSGGDQGAPSLTENYAANAGTGDYTFANMVEAEPGAINIWPTDEGTSMALSTASDDVVMWAMYCAIAANETTGTYKGTDAGMELQFSFKYSYS*
Ga0151659_1029197	Ga0151659_10291971	F061521	MMPDKLLTIEVERIVNLVAGFGWKKVEEKVLEGKVQITFEKQVPVTHEAA*
Ga0151659_1032420	Ga0151659_10324201	F007892	QKIVTKINAKIDITHNINNTILERYTVSTQNILKTANPSLYSKNTWQIVDDAFNSDQELFGGWLSEDDIYFLDYGLSVSNLKEAMKIAKFNKQLAIYDNVSQKVIPVAD*
Ga0151659_1054453	Ga0151659_10544531	F054555	VTSHSKVRVFVVGIDYDDYCEDRGHLTIQRQVTLIELVEEINEIMLFGSRFPQFPPEANPTVTYAWDLNNQEDGDCYHEIINELDKINRKEVT*
Ga0151659_1061739	Ga0151659_10617391	F072257	MEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKRGWCVSDKGLTAFYKQMLYTFAYEQGNVHEHCFINSCMWAYHSAISSRDEHAEPCRRNTYCKS*
Ga0151659_1064140	Ga0151659_10641402	F013764	MMMSAPSFLFFRNPKKTNPSGLPPYTKRALIAVSVAIPMAFGLNIPLSTFGTFMPVWGVIMINAIVIPSYMTFIIPKASKVFASWLNPTTIVKGVN*
Ga0151659_1077638	Ga0151659_10776381	F054555	MELKTMNFPTKVRDFVVGLDYDSIEEDKGHLTIRRTVTLTELIEEIKEIMLIGSRYPQFPPEANPTVTYAWDLNNQEDGDCYHEIINELEKDNRKEVTY*
Ga0151659_1079119	Ga0151659_10791191	F005564	MMVIFFLGDSSLQTLAWLDEMKRYMVSAAIALVFMPSVVAQIDG*
Ga0151659_1096759	Ga0151659_10967592	F029758	MRTNDRLNAVEHIWYAESNRSIYIERYASGYLGLNCMQGDEYEYFKKNWGKIDRGMSEFYSTMKNDLMKLRAEMSELEFIDKVMWIYLECKMNVERYE*
Ga0151659_1116115	Ga0151659_11161154	F004850	MSDTYEFEIHYGEIEEPLYLTNDKNYICDEMRDLMEELGIELNEVIYKVNKI*
Ga0151659_1120004	Ga0151659_11200041	F056896	NCCGAEASYLSEELCGDCLEHAVFDDEDEDMGETCRNGKEWNKCECC*
Ga0151659_1120004	Ga0151659_11200043	F062159	MEDLTHYIEIDWSGVCEDCDLKHGDISPEQSFEIDLALNKINEVLNEFIKQNR*
Ga0151659_1136949	Ga0151659_11369491	F015742	MDSKKAYEKIKEDIVDRESAYLCTEIERALDRIINYTDPLDDTMFRDIKAPAIKLLK
Ga0151659_1148407	Ga0151659_11484071	F069050	LYVSATDWVKLTAQRNPYGAKQSLNNTAPSSRTEAGGVTTCTLDLAAASLFGTGAVAENVKVEVTDGSSPYETVYACVTRSGSASMAIAFTGAVANDAYQVLLSHI*
Ga0151659_1150246	Ga0151659_11502461	F002281	MKINYPKVAEHLGVPLQGNETFDELLKIEKQVKEHKERQERIAEEKANIQRVDAQTKKYWGK*
Ga0151659_1176305	Ga0151659_11763051	F095491	MDVELATIMEPAMKSFRATSTERMLERAAEFTIAKIDDPASIWFRATFVNLMLSKSPSFFLEAASDEMLGDMGAVVEISARHLAETPEMQAGIHGWIDRVMDYSADKTLGEVLQIEGSGARPPIDALADATWPAFTNVLGSPQAQAWMDRLLDELIDEYDKAAVGR*
Ga0151659_1177832	Ga0151659_11778321	F054555	MYKQIESCSSKRDFVVGIDYDSIEEDKGHMTIRRKVSIEDLMEEIHSIILHGSTYPQFPPEAKPSITYAWDLSNKDDGDYYHELKNELEKDNRMEVI*
Ga0151659_1222647	Ga0151659_12226471	F017160	MDGLDMFKGREINRRPEPEMGLSKMARMRKEIKRGKKVRMIAEGNELANANIDLFKKL*
Ga0151659_1255879	Ga0151659_12558791	F043410	MAKYANLQNMDIGKVETFDVQSIFNKALIGIMISKELITEEEVLIILGNINRQQEIYLDQQIVRLKKTV*
Ga0151659_1268167	Ga0151659_12681671	F023829	MFNPKNQYKMKIKLIRSYRSKNGNPTFVYGVTGNDADLTAFKDAQGEYYREDEDGTPLWLTKRCVGNTGSLIITTNGNIVPDMSAFDQAASIASQYGGNFGQEVAKMSAASVLGISQAPAPAASESAPVAEKSEDLGDV*