3300011249: Basal ice microbial communities from dark ice on Arctic glacier surface, Midre Lovenbreen, Svalbard, Norway (sample 23)

Overview

Basic Information

• IMG/M Taxon OID: 3300011249
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0155997 | Ga0137489
• Sample Name: Basal ice microbial communities from dark ice on Arctic glacier surface, Midre Lovenbreen, Svalbard, Norway (sample 23)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81857371
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1
Not Available	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Basal Ice → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → glacier ice field → ice
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Midre Lovenbreen Svalbard, Norway
• Coordinates
  • Lat. (^o): 79.48416667
  • Long. (^o): 12.09222222
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F005599	Metagenome / Metatranscriptome	395	Y
F014178	Metagenome / Metatranscriptome	265	Y
F035895	Metagenome / Metatranscriptome	171	Y
F044201	Metagenome / Metatranscriptome	155	Y
F044449	Metagenome / Metatranscriptome	154	Y
F069623	Metagenome / Metatranscriptome	123	Y
F077506	Metagenome / Metatranscriptome	117	Y
F079536	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137489_1005723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	2199
Ga0137489_1007397	Not Available	1803
Ga0137489_1009926	All Organisms → cellular organisms → Bacteria	1434
Ga0137489_1011875	All Organisms → cellular organisms → Bacteria	1248
Ga0137489_1013881	Not Available	1095
Ga0137489_1018644	Not Available	841
Ga0137489_1022902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	695
Ga0137489_1024787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	649
Ga0137489_1026426	Not Available	612
Ga0137489_1031447	All Organisms → cellular organisms → Bacteria	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137489_1005723	Ga0137489_10057232	F044201	MKTYNLEMRHAASKRKLNALPDNRLEPLKSRLSDDDAAIAWARNELLGFGMKRGGADYQYVEGALAELLPFSAIEGDKDMRRLGRWVCNADGITWRDAAALTPED*
Ga0137489_1007397	Ga0137489_10073973	F044449	MAEIGEPERVVRRERENEPAITPTQPVTTPELEPAK*
Ga0137489_1009926	Ga0137489_10099262	F079536	MDSPIPAVGSGHANDVMLKQLGEVTVDASRLEHLAVEIARNLKIDAGTPDAVAVLRRADAVPPPWSTVTSKDIAAWASSTGRLLEIRDRMFEASGGSRFAGSRGDTIATESADGTVFPADEEYLARYLKRLERQLAAGAELQSRLDYHDENGQRWPLVTLYSQRDSGENTEQPPMRLPAEWTRWLSA*
Ga0137489_1011875	Ga0137489_10118752	F069623	MKSSAEIDINQRVFALQHMDSGEYICLLQEGTDYLACFSDGDSALEFRSSLGLQEHVDLQAMTLDHSPFKHFWLDGENVDIRQEQEVAN*
Ga0137489_1013881	Ga0137489_10138813	F000447	MGYVEIFRMDKYGAGWVDLKDTTPEERLDLELALEVAKSP
Ga0137489_1018644	Ga0137489_10186442	F077506	VIDLSERTRRISGSRLLEILQSYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKA
Ga0137489_1022902	Ga0137489_10229022	F005599	MMRMPTRLNNGEGRTGGEEIDERTRSIRRGNGHGTLEW*
Ga0137489_1024787	Ga0137489_10247871	F014178	MKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKRG*
Ga0137489_1026426	Ga0137489_10264261	F077506	TRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLGSIQADAVFIAPPGRNAHKKA
Ga0137489_1031447	Ga0137489_10314471	F035895	FPGMDTDNQGNRIAFGSPTTDYGFTQDEYFAGRSPQADTFSPI*