Sample 3300011194

Overview

Basic Information
IMG/M Taxon OID	3300011194 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121480 \| Gp0156002 \| Ga0137479
Sample Name	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 14 - S13.2.55.2.a - transect 2, repeat 2, age 50-113 years, surface depth).
Sequencing Status	Permanent Draft
Sequencing Center	University of Bristol
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	8951989
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomes Of Arctic Soils
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Midre Lovenbreen Svalbard, Norway
Coordinates	Lat. (^o)	78.90055556	Long. (^o)	12.07611111	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F000835	Metagenome	869	Y
F001578	Metagenome / Metatranscriptome	669	Y
F002204	Metagenome / Metatranscriptome	584	Y
F002416	Metagenome	561	Y
F006124	Metagenome / Metatranscriptome	381	Y
F008643	Metagenome	330	Y
F010124	Metagenome	308	Y
F014483	Metagenome	262	Y
F016445	Metagenome	247	Y
F017363	Metagenome / Metatranscriptome	241	Y
F024393	Metagenome / Metatranscriptome	206	Y
F034084	Metagenome	175	Y
F035446	Metagenome	172	Y
F036566	Metagenome	169	Y
F074396	Metagenome / Metatranscriptome	119	Y
F091822	Metagenome	107	Y

Family

Category

Number of Sequences

3D Structure?

F000265

Metagenome / Metatranscriptome

1420

F000835

Metagenome

869

F001578

Metagenome / Metatranscriptome

669

F002204

Metagenome / Metatranscriptome

584

F002416

Metagenome

561

F006124

Metagenome / Metatranscriptome

381

F008643

Metagenome

330

F010124

Metagenome

308

F014483

Metagenome

262

F016445

Metagenome

247

F017363

Metagenome / Metatranscriptome

241

F024393

Metagenome / Metatranscriptome

206

F034084

Metagenome

175

F035446

Metagenome

172

F036566

Metagenome

169

F074396

Metagenome / Metatranscriptome

119

F091822

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0137479_100003	All Organisms → cellular organisms → Bacteria	53417	Open in IMG/M
Ga0137479_100004	All Organisms → cellular organisms → Bacteria	53277	Open in IMG/M
Ga0137479_100005	All Organisms → cellular organisms → Bacteria	42715	Open in IMG/M
Ga0137479_100010	All Organisms → cellular organisms → Bacteria	32050	Open in IMG/M
Ga0137479_100029	All Organisms → cellular organisms → Bacteria	22364	Open in IMG/M
Ga0137479_100032	All Organisms → cellular organisms → Bacteria	21886	Open in IMG/M
Ga0137479_100071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	16945	Open in IMG/M
Ga0137479_100084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15902	Open in IMG/M
Ga0137479_100100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	14141	Open in IMG/M
Ga0137479_100121	All Organisms → cellular organisms → Bacteria → Acidobacteria	12884	Open in IMG/M
Ga0137479_100153	All Organisms → cellular organisms → Bacteria	11393	Open in IMG/M
Ga0137479_100154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	11231	Open in IMG/M
Ga0137479_100205	All Organisms → cellular organisms → Bacteria → Acidobacteria	9005	Open in IMG/M
Ga0137479_100228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8387	Open in IMG/M
Ga0137479_100230	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	8238	Open in IMG/M
Ga0137479_100234	All Organisms → cellular organisms → Bacteria	8049	Open in IMG/M
Ga0137479_100316	All Organisms → cellular organisms → Bacteria	6064	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0137479_100003

All Organisms → cellular organisms → Bacteria

53417

Open in IMG/M

Ga0137479_100004

All Organisms → cellular organisms → Bacteria

53277

Open in IMG/M

Ga0137479_100005

All Organisms → cellular organisms → Bacteria

42715

Open in IMG/M

Ga0137479_100010

All Organisms → cellular organisms → Bacteria

32050

Open in IMG/M

Ga0137479_100029

All Organisms → cellular organisms → Bacteria

22364

Open in IMG/M

Ga0137479_100032

All Organisms → cellular organisms → Bacteria

21886

Open in IMG/M

Ga0137479_100071

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes

16945

Open in IMG/M

Ga0137479_100084

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

15902

Open in IMG/M

Ga0137479_100100

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes

14141

Open in IMG/M

Ga0137479_100121

All Organisms → cellular organisms → Bacteria → Acidobacteria

12884

Open in IMG/M

Ga0137479_100153

All Organisms → cellular organisms → Bacteria

11393

Open in IMG/M

Ga0137479_100154

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes

11231

Open in IMG/M

Ga0137479_100205

All Organisms → cellular organisms → Bacteria → Acidobacteria

9005

Open in IMG/M

Ga0137479_100228

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

8387

Open in IMG/M

Ga0137479_100230

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes

8238

Open in IMG/M

Ga0137479_100234

All Organisms → cellular organisms → Bacteria

8049

Open in IMG/M

Ga0137479_100316

All Organisms → cellular organisms → Bacteria

6064

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0137479_100003	Ga0137479_10000319	F014483	MKASTAKSFSKKLSCPSSTLLLSFRLQVLAPEINFLVKHHLGGCDFCYCELSLLTWYTSPVKGECRTPDLPINLRVLAESILGQGKSERVVGENSDGAKGLSFIDV*
Ga0137479_100004	Ga0137479_10000438	F001578	MGWDGDDLAGKMEEVFERQQAAADARANRGTSSVEERAKSATFESLRLNRSRIMSQLAGATSPRHRTMLESALKSINDEMAK*
Ga0137479_100005	Ga0137479_1000059	F006124	MTWQEVIIDPNEIKVFMALDGPQHTWRTVGGIARQTGLPKDRVWQILSKYNKEFTRLSEVPSASGNPLVGLLERVDT*
Ga0137479_100010	Ga0137479_10001018	F091822	MNESLLISFEEAGRLLGGLHPNTLRQRKAGTENLTHVTGFGRRIMLLREEVNSLIESKIAQAQAIERDRQKILRLAS*
Ga0137479_100029	Ga0137479_1000299	F017363	MKTLFALRRANGDWFALDDEGLFRVPVFHSSGAAMVARSRDAGMECFRPVQLDAAAFKNLTTTDEGQACFWLVADPLMNLSRGRSLNRTELEQFMMNGSGTPPPREVAR*
Ga0137479_100032	Ga0137479_10003213	F016445	MRSEEKTRVDAKRVAKIIGCSPKTVLNGGAGTGQLTRIRNGTRQIRFILEEVLAFAERQEEQASRQSTGPQPK*
Ga0137479_100071	Ga0137479_1000715	F036566	MAIGWGKSFEEQVEEANQRASEKRAPRIPVADRERLRRLESLSLSRSRIEQQLERAVQPAHRAMLMKALQVIEKEAEAVESETSSGQLQT*
Ga0137479_100084	Ga0137479_1000844	F035446	MSIRERGKVWPMVSVLAGALFVLVIVPLILHRQTSARMATVDPNVTIGDGPATHLQARENPSYRWPDSEVPRTAERLRDATAVAIAATTNVLDGAMHNQMPRDAPAILKDIAERRLIPVEWLTSEPGVLAMPHGTVHLRYLRQPLSIEVISAPNDRNDGPAILIRIPDRENTGVGSRYFESMRLDGTVYPNPFAPIAEIIASGWQPRLFKQTQIAEEERAQLEQWSRTMTNNK*
Ga0137479_100100	Ga0137479_10010010	F024393	MSVQESSATALVRFTGLGIVCFNKDRQRGEIAAIRDDKHTLSIKIQKPVFQDGADSDVIVYQDVATYEKLPKDGVELEIKSERNPAVAGYEIYQGGDFDRLESTDGNDFRWVVNMHTLHGASALAPTAKQNFPLAKIYIGNGLFYAHKLDRNIFFEKVEKDAGGAATQREVFGNVAETIGVKIEGDEVSLRIRIGDREETHSLKRVAGFPYRIEIKNMDYSAEAVYSDLPEYYQYLSSPSGKQFDLTPIVEDEAAGGKSISGRDFCHPIVVDDPPSIDDL*
Ga0137479_100121	Ga0137479_1001217	F000835	MDDLTNRVLGSFRHWGKDELDLHTLFEAGGNDPEARTRVFDIVERSVKEGLLEELGNDFYSLTEKGREATRPPV*
Ga0137479_100153	Ga0137479_10015312	F010124	MKKYMTLLVASVLVLASVSLPVAAKQGDTQTSTFEKVRIKIAKLGVGEKAKATVYLKDGTKKKGYIAQAGDDDFVLRDRNTDAATTIRYLDVTKVDSNRGHSTARNVTIGVVAGVGAVLAVLGLLIANLDD*
Ga0137479_100154	Ga0137479_1001547	F034084	MMTPEERLDRLERIAKLMVRAGLRARREMRQQDDKITIMIDAQIKNEERFAKLAKAQTELSESQTHSDRRLDALVDIVREGRNGKSK*
Ga0137479_100205	Ga0137479_1002054	F000265	MPELRGIQATDDVKAEWTRAYDIYLSAPGDRYDKKNDRTARIDSVAKELRLTRKQAKRRVRNYEAWQRNISKKLVSP*
Ga0137479_100228	Ga0137479_1002285	F002416	MNNLFFLADVPGLEESRAAQLGRRLLAIAFGLKALNGVIASALLIVLGVVSASAQTPGGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGESVPLDNTF*
Ga0137479_100230	Ga0137479_1002305	F008643	MQMNLRRTLATILLSIFAGLSIGGQQVLAQTAPASPSQEEKRTDETNLDTQLYLLVATNQEVDDARLPVALDSVVKQLRASLPFRNYRLMTTLVNRVKNEGRLNLKWIGGPLIGSAAASAGTPSFNEFRVNSVKLVVDDGGRQLVRMDGFAFGARIPIQTGVVASNAPAAPVVNYEPTGLNTDISMREGEAVVVGTLNVGPSGDAIILVMSAKRTNK*
Ga0137479_100234	Ga0137479_1002345	F074396	MRGNDQPAEDVGVMIDYGVLGGSDEKRTNSEGWVEFHNYEEKPGTIWVHGENMGEHSLDDGNTDSFTI*
Ga0137479_100316	Ga0137479_1003164	F002204	MENEKKSPEISFEVRVKPGRAGTDPEAPDWEVLELEDGEIKNNADIYDNMTLAEANQISGMWRSKKEEAEAAPADSSAAH*

Scaffold ID

Protein ID

Family

Sequence

Ga0137479_100003

Ga0137479_10000319

F014483

MKASTAKSFSKKLSCPSSTLLLSFRLQVLAPEINFLVKHHLGGCDFCYCELSLLTWYTSPVKGECRTPDLPINLRVLAESILGQGKSERVVGENSDGAKGLSFIDV*

Ga0137479_100004

Ga0137479_10000438

F001578

MGWDGDDLAGKMEEVFERQQAAADARANRGTSSVEERAKSATFESLRLNRSRIMSQLAGATSPRHRTMLESALKSINDEMAK*

Ga0137479_100005

Ga0137479_1000059

F006124

MTWQEVIIDPNEIKVFMALDGPQHTWRTVGGIARQTGLPKDRVWQILSKYNKEFTRLSEVPSASGNPLVGLLERVDT*

Ga0137479_100010

Ga0137479_10001018

F091822

MNESLLISFEEAGRLLGGLHPNTLRQRKAGTENLTHVTGFGRRIMLLREEVNSLIESKIAQAQAIERDRQKILRLAS*

Ga0137479_100029

Ga0137479_1000299

F017363

MKTLFALRRANGDWFALDDEGLFRVPVFHSSGAAMVARSRDAGMECFRPVQLDAAAFKNLTTTDEGQACFWLVADPLMNLSRGRSLNRTELEQFMMNGSGTPPPREVAR*

Ga0137479_100032

Ga0137479_10003213

F016445

MRSEEKTRVDAKRVAKIIGCSPKTVLNGGAGTGQLTRIRNGTRQIRFILEEVLAFAERQEEQASRQSTGPQPK*

Ga0137479_100071

Ga0137479_1000715

F036566

MAIGWGKSFEEQVEEANQRASEKRAPRIPVADRERLRRLESLSLSRSRIEQQLERAVQPAHRAMLMKALQVIEKEAEAVESETSSGQLQT*

Ga0137479_100084

Ga0137479_1000844

F035446

MSIRERGKVWPMVSVLAGALFVLVIVPLILHRQTSARMATVDPNVTIGDGPATHLQARENPSYRWPDSEVPRTAERLRDATAVAIAATTNVLDGAMHNQMPRDAPAILKDIAERRLIPVEWLTSEPGVLAMPHGTVHLRYLRQPLSIEVISAPNDRNDGPAILIRIPDRENTGVGSRYFESMRLDGTVYPNPFAPIAEIIASGWQPRLFKQTQIAEEERAQLEQWSRTMTNNK*

Ga0137479_100100

Ga0137479_10010010

F024393

MSVQESSATALVRFTGLGIVCFNKDRQRGEIAAIRDDKHTLSIKIQKPVFQDGADSDVIVYQDVATYEKLPKDGVELEIKSERNPAVAGYEIYQGGDFDRLESTDGNDFRWVVNMHTLHGASALAPTAKQNFPLAKIYIGNGLFYAHKLDRNIFFEKVEKDAGGAATQREVFGNVAETIGVKIEGDEVSLRIRIGDREETHSLKRVAGFPYRIEIKNMDYSAEAVYSDLPEYYQYLSSPSGKQFDLTPIVEDEAAGGKSISGRDFCHPIVVDDPPSIDDL*

Ga0137479_100121

Ga0137479_1001217

F000835

MDDLTNRVLGSFRHWGKDELDLHTLFEAGGNDPEARTRVFDIVERSVKEGLLEELGNDFYSLTEKGREATRPPV*

Ga0137479_100153

Ga0137479_10015312

F010124

MKKYMTLLVASVLVLASVSLPVAAKQGDTQTSTFEKVRIKIAKLGVGEKAKATVYLKDGTKKKGYIAQAGDDDFVLRDRNTDAATTIRYLDVTKVDSNRGHSTARNVTIGVVAGVGAVLAVLGLLIANLDD*

Ga0137479_100154

Ga0137479_1001547

F034084

MMTPEERLDRLERIAKLMVRAGLRARREMRQQDDKITIMIDAQIKNEERFAKLAKAQTELSESQTHSDRRLDALVDIVREGRNGKSK*

Ga0137479_100205

Ga0137479_1002054

F000265

MPELRGIQATDDVKAEWTRAYDIYLSAPGDRYDKKNDRTARIDSVAKELRLTRKQAKRRVRNYEAWQRNISKKLVSP*

Ga0137479_100228

Ga0137479_1002285

F002416

MNNLFFLADVPGLEESRAAQLGRRLLAIAFGLKALNGVIASALLIVLGVVSASAQTPGGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGESVPLDNTF*

Ga0137479_100230

Ga0137479_1002305

F008643

MQMNLRRTLATILLSIFAGLSIGGQQVLAQTAPASPSQEEKRTDETNLDTQLYLLVATNQEVDDARLPVALDSVVKQLRASLPFRNYRLMTTLVNRVKNEGRLNLKWIGGPLIGSAAASAGTPSFNEFRVNSVKLVVDDGGRQLVRMDGFAFGARIPIQTGVVASNAPAAPVVNYEPTGLNTDISMREGEAVVVGTLNVGPSGDAIILVMSAKRTNK*

Ga0137479_100234

Ga0137479_1002345

F074396

MRGNDQPAEDVGVMIDYGVLGGSDEKRTNSEGWVEFHNYEEKPGTIWVHGENMGEHSLDDGNTDSFTI*

Ga0137479_100316

Ga0137479_1003164

F002204

MENEKKSPEISFEVRVKPGRAGTDPEAPDWEVLELEDGEIKNNADIYDNMTLAEANQISGMWRSKKEEAEAAPADSSAAH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011194: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 14 - S13.2.55.2.a - transect 2, repeat 2, age 50-113 years, surface depth).

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences