3300011124: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate

Overview

Basic Information

• IMG/M Taxon OID: 3300011124
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173504 | Ga0151655
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73456061
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.035
  • Long. (^o): 137.41472
  • Alt. (m): N/A
  • Depth (m): 803

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F004520	Metagenome / Metatranscriptome	434	Y
F023875	Metagenome	208	N
F029758	Metagenome / Metatranscriptome	187	Y
F049935	Metagenome / Metatranscriptome	146	N
F058909	Metagenome / Metatranscriptome	134	Y
F069450	Metagenome	124	Y
F079928	Metagenome / Metatranscriptome	115	N
F097367	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151655_1007797	Not Available	733
Ga0151655_1008521	All Organisms → Viruses → Predicted Viral	1554
Ga0151655_1020376	Not Available	739
Ga0151655_1050349	Not Available	549
Ga0151655_1053072	Not Available	583
Ga0151655_1088993	Not Available	532
Ga0151655_1089023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	582
Ga0151655_1099701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	597

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151655_1007797	Ga0151655_10077972	F058909	MKLTNTEQNVLLEALDHMEEEIQDLMSERTLRGDMWKERLDACKSIRTKVKES*
Ga0151655_1008521	Ga0151655_10085215	F079928	MTKIPTLYDKLKPRVRAKLKENEGKYSSRVRQVIAKLESTYFVQDLTIGELKRIHLFSDTDYVNQTALSIMWGDEIFDDYDGSN*
Ga0151655_1020376	Ga0151655_10203761	F049935	MQTDIDFEYWDAQIKHFVSIFQSDDASRADKKEAKTHLTEIQSRLKRDVRDLN
Ga0151655_1020376	Ga0151655_10203763	F023875	GITYTHSLFWVIMLFFSLVQFFAYANGLRVQLERRFLKDFNAAVKKSLEEQQPKEYNQLRNN*
Ga0151655_1050349	Ga0151655_10503492	F029758	MRKNDRLKAVEHIWYAESDRWIYIERYASGYLGLNCMQGDEYEYFKKNWGKIDRGMSEFYSAMKNDLMKLRAEMSELEFIDKVMWIYLECKMNVERYE*
Ga0151655_1053072	Ga0151655_10530721	F069450	MLDLFGAAAILVSVMSNMEQIPGVPSWERVKQLKEAAARYPKSDWSEGSYNEIFRKAADAKRKKYGTTCSYNGY*
Ga0151655_1088797	Ga0151655_10887972	F000060	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEAGKLKHQAKLSKLNYLKNGGEGLEHEILELKADIIEAESHQGTLKEAFELTKDEIKILKKLIKELYDMAEPTRIKGYTDEQMFEENAANEFTVNMGREIQAEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKKTRILEGNVNPQLKIELKGVEDETV*
Ga0151655_1088993	Ga0151655_10889932	F004520	MKLTNEEKDEITMRVVDSLYEKLANELEYELQEHENFPETNDAYMDLFNEMTVKIVKYMRSELFQPMTNEDLK*
Ga0151655_1089023	Ga0151655_10890232	F097367	MERKNYYKVRYAGKLIKVIPAHSKWEAIDRIYNDSISEYPWI
Ga0151655_1099701	Ga0151655_10997012	F058909	MKLTNTEKNVLLVALDHMEEHIQVLMEDQDSHGDMWHVIDACKTIRTKI*